Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31461
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.25 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.25 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 412 ILWLFCISGFLIWKSNSTSFTSF*EQVIMTALM-KLKTLEGHLQDLKGFSKPKI 570
           I+  FCI   + W      FTS     ++T L+ +  TL G ++ LK +  P +
Sbjct: 218 IMCYFCIWKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGAMEGLKYYVTPNL 271


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 412 ILWLFCISGFLIWKSNSTSFTSF*EQVIMTALM-KLKTLEGHLQDLKGFSKPKI 570
           I+  FCI   + W      FTS     ++T L+ +  TL G ++ LK +  P +
Sbjct: 271 IMCYFCIWKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGAMEGLKYYVTPNL 324


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 229 LFLQLQIL*YLPICQLSLSIRLRKRHLMFLNNYL-EKACNV 110
           +F+ LQ L    I      ++++++H +F+NN L   AC++
Sbjct: 250 VFIGLQSLSLTNIQLEHFEMKIKRKHNVFVNNILAASACSL 290


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 373 IYHIC-FRKLRKTSCCRNWWDGTHRKLTDRIWLTQGC 266
           IY++  FR L K +   NWWD      +++I  ++GC
Sbjct: 387 IYNMVRFRNLVKGTKIDNWWDNG----SNQIAFSRGC 419


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 346 RKTSCCRNW 320
           RK +CCR+W
Sbjct: 396 RKKNCCRSW 404


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 346 RKTSCCRNW 320
           RK +CCR+W
Sbjct: 396 RKKNCCRSW 404


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 497 IITCSQNEVKLVEFDFQMRNPEIQNNHKMLRWRAGVQ 387
           II   +N+V L   D  +    + NN++   W A V+
Sbjct: 362 IIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWSATVK 398


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 497 IITCSQNEVKLVEFDFQMRNPEIQNNHKMLRWRAGVQ 387
           II   +N+V L   D  +    + NN++   W A V+
Sbjct: 400 IIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWSATVK 436


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 256 SVNSSPESAKSCQSTSYV 309
           S N+SP  A+ C ST+ +
Sbjct: 740 SPNASPSPAEQCASTTTI 757


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,015
Number of Sequences: 438
Number of extensions: 4182
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)