Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31456
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.68
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 29 0.90
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 2.8
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 3.6
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 4.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 6.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 6.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 6.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 6.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 6.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 6.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 6.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 6.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 6.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 6.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 6.4
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.4
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 8.4
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 8.4
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 8.4
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 0.68
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 490 EELQKRFGELLDENLILKETLKQNNDSMKEQFLLIASCQEDMDE 621
EEL ++G+L +EN +K+ L K+Q L A+ +D+ E
Sbjct: 1098 EELTSKYGKLGEENAQIKDELLALRKKSKKQHDLCANFVDDLKE 1141
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 28.7 bits (61), Expect = 0.90
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +1
Query: 385 AEANMAFKAHFKLGDCPSPASMMV-ASTMITDDKSTEELQKRFGELLDENLILKETLKQN 561
AEA F+ + LG+ P P +++ A+ + K E+L+K E ++ +L KE L++
Sbjct: 89 AEATF-FRVYETLGEVPDPYPLLIEAANNLKTQKQIEDLKKE-KEEMEGSLQGKEKLERE 146
Query: 562 NDSMKEQ 582
++++++
Sbjct: 147 VENLRKE 153
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 469 ITDDKSTEELQKRFGELLDENLILKETLKQNNDSMKEQFLLIASCQEDMDEDPYA 633
+ D T ++Q+ F + ++ E L + KE+FLLI+ + D++ + A
Sbjct: 640 VNPDVKTMDIQETFLQDYEDETFANEGLSASK--FKEEFLLISDSKSDLNSEEIA 692
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 50 NSCFEFTCCFVDICEVLIRDCCKSPV 127
N ++FT F D+ E+L+ +C + V
Sbjct: 694 NGVYDFTLAFFDLYEILLDNCISTSV 719
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 30 NQNKILQIVVLNLHVVLLTFVKC*YAIAANHLFSLRIKKLKFNAIKIKLVFIYV*MKDFR 209
N K+ + + VL FVKC ++ F ++ LK N+IK + + KD
Sbjct: 481 NNFKVTSVAPPQIGQVLPQFVKCQMGLSRPGPFHSALRDLK-NSIKSPFLCLIYISKDME 539
Query: 210 YPL 218
Y L
Sbjct: 540 YKL 542
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 138 YATKTGDLQQSRINTSQMSTKQHVNSKQLFVISYFDLE 25
++ KT + Q I Q + K+H+N+ + + YFD++
Sbjct: 1149 FSDKTDENSQETIQVFQ-TVKEHLNTNNIKMKKYFDMK 1185
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 138 YATKTGDLQQSRINTSQMSTKQHVNSKQLFVISYFDLE 25
++ KT + Q I Q + K+H+N+ + + YFD++
Sbjct: 1149 FSDKTDENSQETIQVFQ-TVKEHLNTNNIKMKKYFDMK 1185
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 138 YATKTGDLQQSRINTSQMSTKQHVNSKQLFVISYFDLE 25
++ KT + Q I Q + K+H+N+ + + YFD++
Sbjct: 1149 FSDKTDENSQETIQVFQ-TVKEHLNTNNIKMKKYFDMK 1185
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 138 YATKTGDLQQSRINTSQMSTKQHVNSKQLFVISYFDLE 25
++ KT + Q I Q + K+H+N+ + + YFD++
Sbjct: 1149 FSDKTDENSQETIQVFQ-TVKEHLNTNNIKMKKYFDMK 1185
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 138 YATKTGDLQQSRINTSQMSTKQHVNSKQLFVISYFDLE 25
++ KT + Q I Q + K+H+N+ + + YFD++
Sbjct: 1149 FSDKTDENSQETIQVFQ-TVKEHLNTNNIKMKKYFDMK 1185
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 138 YATKTGDLQQSRINTSQMSTKQHVNSKQLFVISYFDLE 25
++ KT + Q I Q + K+H+N+ + + YFD++
Sbjct: 1149 FSDKTDENSQETIQVFQ-TVKEHLNTNNIKMKKYFDMK 1185
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 138 YATKTGDLQQSRINTSQMSTKQHVNSKQLFVISYFDLE 25
++ KT + Q I Q + K+H+N+ + + YFD++
Sbjct: 1149 FSDKTDENSQETIQVFQ-TVKEHLNTNNIKMKKYFDMK 1185
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 138 YATKTGDLQQSRINTSQMSTKQHVNSKQLFVISYFDLE 25
++ KT + Q I Q + K+H+N+ + + YFD++
Sbjct: 1149 FSDKTDENSQETIQVFQ-TVKEHLNTNNIKMKKYFDMK 1185
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 138 YATKTGDLQQSRINTSQMSTKQHVNSKQLFVISYFDLE 25
++ KT + Q I Q + K+H+N+ + + YFD++
Sbjct: 1149 FSDKTDENSQETIQVFQ-TVKEHLNTNNIKMKKYFDMK 1185
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 138 YATKTGDLQQSRINTSQMSTKQHVNSKQLFVISYFDLE 25
++ KT + Q I Q + K+H+N+ + + YFD++
Sbjct: 1149 FSDKTDENSQETIQVFQ-TVKEHLNTNNIKMKKYFDMK 1185
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 138 YATKTGDLQQSRINTSQMSTKQHVNSKQLFVISYFDLE 25
++ KT + Q I Q + K+H+N+ + + YFD++
Sbjct: 1149 FSDKTDENSQETIQVFQ-TVKEHLNTNNIKMKKYFDMK 1185
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 611 TWMKTHMLHRRSSKRPRNWSRRLRQENKKLKFDIQ 715
+W H LH ++ KR R+ ++L + K K ++
Sbjct: 986 SWCSKHFLHSKTLKRARDIRQQLVEIMSKQKISLE 1020
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +1
Query: 304 DLKCNGIHNGENSLDNTQIEEAMKDLPAEANMAFKAHFKLGD 429
D+ NG+ NG ++ +++++E A+ ++ H L D
Sbjct: 753 DILQNGVKNGNDAKSDSKVQEKAPQNEADGSLKKDEHVVLSD 794
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 8.4
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Frame = +1
Query: 256 DDESFIILGTSPGSSLDLKCNGIHNGENSLDNTQIEEAMKDLP-AEANMAFKAHFKLGDC 432
D SF L PG S N + + + E MKD P A A+ K
Sbjct: 793 DSSSFSSLHAQPGKSGIATMGVADNTIRTTERSTFSEIMKDSPSAHASPGAKTSPNASRA 852
Query: 433 PSPASMMVASTMITDDKSTEELQKRFGELLDENLI 537
P P + I+ D +T+ LQ + + +++
Sbjct: 853 PEPTG---GTNSISQD-TTQSLQMQSNSVNSSSMV 883
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 460 STMITDDKSTEELQKRFGELLDE 528
S+ DD +TE ++KRF L +E
Sbjct: 545 SSFTLDDSNTESIKKRFDSLKEE 567
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,288
Number of Sequences: 5004
Number of extensions: 52252
Number of successful extensions: 148
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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