Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31456
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1188 + 25053594-25054941,25055025-25055650 33 0.23
02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109... 31 1.2
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584... 30 2.2
02_01_0773 - 5760034-5760386,5760889-5760925,5761069-5761225,576... 30 2.2
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 29 3.8
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 29 3.8
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145... 29 3.8
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491... 29 5.0
09_04_0691 - 19501342-19501779 29 5.0
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 29 5.0
03_05_0852 - 28241454-28241762 29 5.0
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 28 6.6
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 28 6.6
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 28 6.6
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221... 28 6.6
>08_02_1188 + 25053594-25054941,25055025-25055650
Length = 657
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -3
Query: 682 TESPRPVPWSLRTSPVQHMG-----LHPCPPDRRRSAGTVPSS 569
T SP P+PWS+R S VQ LH C P RR G + SS
Sbjct: 453 TASPTPLPWSMRLSIVQGAARGLAYLHECSP-RRYVHGCIKSS 494
>02_05_0973 +
33209385-33209456,33210517-33210721,33210810-33210975,
33211268-33211490,33211928-33212004,33212090-33212183,
33212202-33212271,33212350-33212447,33212565-33212692,
33212772-33212900,33213013-33213421,33213984-33214105,
33214224-33214313,33215092-33215304,33215453-33215584,
33216258-33216333,33216403-33216420
Length = 773
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -3
Query: 670 RPVPWSLRTSPVQHMGLHPCPPDRRRSAGTVPSSNHYSALKFPSVSSSHLRARRIVSATP 491
+P W L +S V H+ +H R RS G++ ++ S S H + +++A P
Sbjct: 609 KPALWELESSSVDHIAVHARTIKRVRSDGSILYGSNTS---ISGCSGCHNEDKELLNAAP 665
Query: 490 L 488
L
Sbjct: 666 L 666
>05_02_0033 +
5847754-5847982,5848308-5848437,5849038-5849116,
5849194-5849251,5849732-5850795,5850899-5851003,
5851369-5851473
Length = 589
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 602 VRRTWMKTHMLHRRSSKRPRNWSRRLRQENKK 697
+R +K + +SSKR RNW+ + ++NKK
Sbjct: 476 LRAARLKKKPVQNKSSKRQRNWTDKQHKKNKK 507
>02_01_0773 -
5760034-5760386,5760889-5760925,5761069-5761225,
5762584-5762773,5762873-5763154,5763582-5763645
Length = 360
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 478 DKSTEELQKRFGELLDENLILKETLKQNNDSMKEQFLL 591
+K EL++RF L +EN +L++ LK S + LL
Sbjct: 209 EKKNSELEERFSTLQNENQMLRQILKNTTVSRRGPVLL 246
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +1
Query: 445 SMMVASTMITDDKSTEELQKRFGELLDENLILKETLKQNNDSMKEQFLLIASCQEDMDE 621
S + S + + EELQK+ ++ N IL+++LK+ +++ + L + +++ DE
Sbjct: 1191 SAAIMSQLAETKQGNEELQKKLADVNRTNDILQDSLKRFEENVTTRDALYLAERQEHDE 1249
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 508 FGELLDENLILKETLKQNNDSMKEQF 585
FGE+++ +++ KET K N+ ++E++
Sbjct: 409 FGEVIEGSVVAKETQKHNHSELQEEY 434
>02_01_0223 +
1453478-1453750,1455788-1456018,1456066-1456200,
1457918-1457971,1458417-1458482,1458593-1458679,
1459338-1459394,1459470-1459500,1459577-1459634,
1459710-1459761,1459881-1459917,1460008-1460210,
1460556-1460633,1460683-1460853,1461126-1461239
Length = 548
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 490 EELQKRFGELLDENLILKETLKQNNDS---MKEQFLLIASCQEDMDED 624
E ++K + LL N LKE L+ N+DS M EQ + Q+ D D
Sbjct: 494 ERIKKEYEALLSHNASLKEKLEGNSDSIPYMNEQNDTNGTHQKQQDSD 541
>12_02_1167 +
26647293-26648356,26648493-26648577,26649129-26649191,
26649381-26649443,26649987-26650070,26650229-26650783
Length = 637
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/95 (18%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = +1
Query: 349 NTQIEEAMKDLPAEANMAFKAHFKLGDCPSPASMMVASTMITDDKSTEELQKRFGELLDE 528
++ + + K++ +EA ++ + C A+ + +++ ++ E GEL +E
Sbjct: 361 SSNVSQVGKEIKSEAEKSYNTCQEKYACMEKANGNLEKQLLSLEEKYENATHANGELKEE 420
Query: 529 NLILKE---TLKQNNDSMKEQFLLIASCQEDMDED 624
L LKE ++ +NN ++ Q +++ + E+
Sbjct: 421 LLFLKEKFVSVVENNTRLEHQLTALSTSFLSLKEE 455
>09_04_0691 - 19501342-19501779
Length = 145
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 605 RRTWMKTHMLHRRSSKRPRNWSRRLRQENKKLKFD 709
RR W++ +HR +K+P+N S + R+ + K + D
Sbjct: 65 RRVWLRVPCIHR--NKQPKNRSEKSRKNDPKNRSD 97
>05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 621 FIHVLLTGGDQQELFLHRIIILL*SFLQYQV 529
+I +L G Q LF+H I+LL SFLQ ++
Sbjct: 1071 YISEILDAGMQGPLFMHLYILLLISFLQVKL 1101
>03_05_0852 - 28241454-28241762
Length = 102
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 673 PRPVPWSLRTSPVQHMGLHPCPPDRRRSAGTV 578
PRP +LR P+ H GL P R RS+GT+
Sbjct: 26 PRP---TLRAPPLLHPGLSVAPSCRTRSSGTL 54
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -3
Query: 673 PRPVPWSLRTSPVQHMGLHPCPPDRRRSAGTVPSSNHYSALKFPSVSSSHLRARRIVSAT 494
P P +R P P P VP S + +A++ P SS R +VSA+
Sbjct: 542 PMATPAQMRGPPSPFPQTGPTPGMPPAGGFGVPGSGNMTAMRPPRPSSGDFTFRPLVSAS 601
Query: 493 P 491
P
Sbjct: 602 P 602
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 655 SLRTSPVQHMGLHPCPPDRRRSAGTVPSSNHYSALKFP 542
S RT + P PP RR+ GTV SSN + A + P
Sbjct: 32 STRTKTTRKSPPAPPPPRPRRAFGTVRSSNAHDAPEKP 69
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 322 IHNGENSLDNTQIEEAMKDLPAEANMAFKAHFKLGDCPSP 441
+ +G ++L+ TQI E +KD+ E F LGDC +P
Sbjct: 1629 LRHGSSALE-TQIREFVKDVQEELLKPGFNSFGLGDCKAP 1667
>02_01_0325 -
2208480-2208674,2208772-2210609,2210980-2211109,
2211231-2211270,2211409-2211531,2211940-2212030,
2212396-2212480,2212565-2212720,2212797-2212853,
2212940-2213110,2213313-2213330,2213479-2213551,
2213754-2213839,2214348-2214466,2214542-2214641
Length = 1093
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 430 CPSPASMMVASTMITDDKSTEELQKRFGELLDENLILKETLKQNN 564
CP P + + D+ E L KR L E + +K+T QN+
Sbjct: 403 CPQPFFGVKRPRQLDDESEMENLFKRAMPWLGEEVCIKDTQNQNS 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,495,310
Number of Sequences: 37544
Number of extensions: 341868
Number of successful extensions: 996
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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