Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31456
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z66513-15|CAA91337.3|  487|Caenorhabditis elegans Hypothetical p...    28   5.9  
AL110499-6|CAB57915.2|  487|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden...    28   7.8  

>Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical
           protein T20F10.1 protein.
          Length = 908

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 286 SPGSSLDLKCNG-IHNGENSLDNTQIEEAMKDLPAEANMAFKAHFKLGDCPSPASMMVAS 462
           S  S++D   N  I  G +     +I E++K    EA +   +H  LG   +P+S  V+ 
Sbjct: 30  STNSAIDAHHNSEIRVGRHRAKLDEIRESLKAYEHEAGL-LSSHVALGSLATPSSSSVSH 88

Query: 463 TMITDDKS 486
           + IT+D +
Sbjct: 89  SDITNDNA 96


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -3

Query: 682 TESPRPVPWSLRTSPVQHMGLHPCPPDRRR-SAGTVPSSNHYSALKFPSVSSSHLRARRI 506
           TE P PV +   ++PVQ +   P PP  R  S    P +N  S +   S +SS       
Sbjct: 611 TEVPSPVTYRKISAPVQKV-TSPAPPAARSVSTDQPPPANRRSQVGILSATSSKATVTVT 669

Query: 505 VSATPLY 485
            + +P Y
Sbjct: 670 SATSPPY 676


>Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical
           protein F19H8.5 protein.
          Length = 514

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 446 LAGDGQSPSLKCALKAMLASAGRSFIASSICVLSKEFSPL*MPLHFKSKLEPGDVP 279
           +AG    P ++  LK + + AG      S  +LS   +PL MP + K  L P   P
Sbjct: 128 MAGQVNHPLIQDGLKLVSSMAGNQKTGISARILSPRIAPL-MPSNSKGLLSPSIFP 182


>Z66513-15|CAA91337.3|  487|Caenorhabditis elegans Hypothetical
           protein F54D5.12 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +1

Query: 427 DCPSPASMMVASTMITDDKSTEELQKRFGELLDENLILKETLKQNNDSMKEQFLLIASCQ 606
           + P+P S++V ++   +D   E++     E L +NLI+   L  ++    + + L  S  
Sbjct: 301 NAPTPFSILVETSGSNEDHDMEKMSAFLDECLSKNLIIDGVLAGSSAEATKMWQLRESAP 360

Query: 607 EDMDEDPY 630
             +  D Y
Sbjct: 361 LAVTRDGY 368


>AL110499-6|CAB57915.2|  487|Caenorhabditis elegans Hypothetical
           protein F54D5.12 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +1

Query: 427 DCPSPASMMVASTMITDDKSTEELQKRFGELLDENLILKETLKQNNDSMKEQFLLIASCQ 606
           + P+P S++V ++   +D   E++     E L +NLI+   L  ++    + + L  S  
Sbjct: 301 NAPTPFSILVETSGSNEDHDMEKMSAFLDECLSKNLIIDGVLAGSSAEATKMWQLRESAP 360

Query: 607 EDMDEDPY 630
             +  D Y
Sbjct: 361 LAVTRDGY 368


>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
           protein F09C3.1 protein.
          Length = 1391

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +1

Query: 358 IEEAMKDLPAEANMAFKAHFKLGDCPSPASMMVASTMITDDKSTEELQKRFGELLDENLI 537
           + + +K LP    + F    ++ +  +  S ++AS    D K+ EE+ ++ G L+   L 
Sbjct: 672 VRKFVKQLP-RGEVDFSGDLEVAESKTEVSRLMASNRQLD-KNLEEMDEKIGLLIKNRLN 729

Query: 538 LKETL 552
           L+E +
Sbjct: 730 LQEVI 734


>U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical
           protein D1044.8 protein.
          Length = 981

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 436 SPASMMVASTMITDDKSTEELQKRFGELLDENLILKETLKQNN 564
           +PA ++    +   + +  E  K FG+++ E  I+K+ L+  N
Sbjct: 480 NPAKLLALKEIFMTNLNDRESDKSFGDMISEVKIIKQQLRHPN 522


>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence
           of males (increasedx chromosome loss) protein 1, isoform
           a protein.
          Length = 1281

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 396 HGFQSTF*AWRLSITGEHDGREHNDNRRQEYRGVAETIRRA 518
           H FQ+ +   ++ +T   D  +HN N+R   RG+A+  R A
Sbjct: 174 HEFQAEYERLKVEMTKAEDDTQHNMNKR---RGIAQEKREA 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,268,156
Number of Sequences: 27780
Number of extensions: 300420
Number of successful extensions: 950
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)