Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31455
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    27   2.2  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    27   2.2  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   2.9  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   2.9  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    26   3.8  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   5.1  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   5.1  
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    25   6.7  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 204 RQLISDRQYGF--RHGRSAGDLLVYLTHRWAEALESKGEALAVSLDI 338
           RQ    R+ GF  RH R  G  + +  + + +A +  G A AVS DI
Sbjct: 355 RQSRMSRRLGFTLRHMRINGSSVSFYPNPYTDATDIAGNATAVSEDI 401


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 426 RSTCRDPRGFRKMVASTEVPYARPCRRLSRYQGSQQEPRPCSPR 295
           R   RD R  R+   S    Y+ P RR  RY+  ++  R  SPR
Sbjct: 37  RRNYRDERSSRRYEDSQRRDYS-PARRRDRYERHRESVREESPR 79


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +3

Query: 207 QLISDRQYGFRHGR----SAGDLLVYLTHRWAEALESKG 311
           QL  D +Y +R G     S  DL+ YLT RW E     G
Sbjct: 35  QLNEDGEYIYRTGDLVLGSVDDLISYLTPRWRERFVING 73


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 351 DRVWHXALLSKLPSYGIPEGLCKWIAS 431
           D V   A  S+LP YGI  GL  W A+
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAA 98


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 351 DRVWHXALLSKLPSYGIPEGLCKWIAS 431
           D V   A  S+LP YGI  GL  W A+
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAA 98


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
 Frame = -1

Query: 347 GFRDIKAHSKSLALALQGFSPPVSKVYKKIAS*ATVTETVLSVTDQLAI---LPDTSGVV 177
           GF D+K   KSLAL+    +  + K+ KKI     ++E    V  Q  I    PD    +
Sbjct: 97  GFSDLKNSDKSLALSKSSSTFDLQKI-KKIHD-CLLSEYRKYVRYQERIEETRPDLQKQL 154

Query: 176 Y*LFAPSPW--KARKLSR*AYSSMGPT 102
             L  P  W   ARKL R     +GPT
Sbjct: 155 TDLKNPIEWYPGARKLRRHIIMHVGPT 181


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 5   ALTRLYRISYCANRVPSSWKTA-HVHPIPKKGDRSDPSSYRPIAIT 139
           +LTR+  + +  +   +  K   +V   PKKG   DPS+  P  +T
Sbjct: 17  SLTRVAHLVFANSHESNDLKMVENVSSTPKKGVLEDPSTLTPEVVT 62


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 357 VWHXALLSKLPSYGIPEGLCKWIASLFW 440
           VW   ++  +  Y +P+G+  W  S  W
Sbjct: 378 VWDHRMVDSVLKYPVPKGVPPWAMSACW 405


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 2   PALTRLYRISYCANRVPSSWKTAHVHPIPKKGDRSDP 112
           P + +     + A +VP  W+   V+PI K G  + P
Sbjct: 58  PEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTTIP 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,955
Number of Sequences: 5004
Number of extensions: 44089
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)