Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31455
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 51 5e-07
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 44 6e-05
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 44 7e-05
09_02_0387 - 8375043-8375831,8376483-8376785,8414151-8414273 29 2.9
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 28 3.9
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 28 3.9
11_01_0237 + 1822218-1822252,1823164-1824145,1824261-1824893 27 6.8
12_01_0235 + 1765117-1766770,1766881-1766984 27 8.9
10_02_0119 + 5488469-5488647,5489030-5489195 27 8.9
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 27 8.9
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 51.2 bits (117), Expect = 5e-07
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +3
Query: 207 QLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHXALLSKL 386
+L+SD YGF G++ D + + +SK E + + LD KAFD + H A+LS +
Sbjct: 415 KLVSDNHYGFIKGKTIQDCPAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVM 474
Query: 387 PSYGIPEGLCKWIASLF 437
G P +W+ +F
Sbjct: 475 QHMGFPLKWIEWVQMVF 491
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 44.4 bits (100), Expect = 6e-05
Identities = 25/70 (35%), Positives = 30/70 (42%)
Frame = +3
Query: 225 QYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHXALLSKLPSYGIP 404
Q GF GR + L+Y T K + + V LD KAFD V +L L G P
Sbjct: 1021 QTGFLKGRCISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFP 1080
Query: 405 EGLCKWIASL 434
E WI L
Sbjct: 1081 ENWISWIKGL 1090
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/70 (35%), Positives = 32/70 (45%)
Frame = +3
Query: 225 QYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHXALLSKLPSYGIP 404
Q GF GR + L+Y T K + L + LD AKAFD V +L L G P
Sbjct: 6 QTGFLKGRCISENLIYATELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFP 65
Query: 405 EGLCKWIASL 434
+ WI +L
Sbjct: 66 DNWISWIKNL 75
>09_02_0387 - 8375043-8375831,8376483-8376785,8414151-8414273
Length = 404
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -2
Query: 511 WNASVN--GHGIRTVXVYNDRDAPPIQKRLAIHLQRPSGI 398
WNA + GHG R + D +APP++++ A RP+GI
Sbjct: 252 WNAHICLLGHGPRKIRAEFDVNAPPVEEQPA--QVRPAGI 289
>09_04_0042 -
14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 56 SWKTAH-VHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKYL 196
+W+ A+ V P KKG DPS Y I + K ER + + ++ YL
Sbjct: 281 AWQAANFVKPDTKKGGSMDPSDYVKIKCIA-SGKPSERFVLVCIVAYL 327
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 210 LISDRQYGFRHGRSAGD--LLVY-LTHRWAEALESKGEALAVSLDIAKAFDRV 359
L+S Q F GR D LL + H + ++ A A LD++KA+DRV
Sbjct: 995 LVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRV 1047
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 83 IPKKGDRSDPSSYRPIAITSLLSKVMERII 172
IPKK D YRPI++ +++ KV+ + +
Sbjct: 955 IPKKDQPIDLKDYRPISLCNVVYKVVSKCL 984
>11_01_0237 + 1822218-1822252,1823164-1824145,1824261-1824893
Length = 549
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +3
Query: 237 RHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHXALLSKLPSYGIPEGLC 416
RH GD L H +A+ LE++ A A SL+ + + L +Y + C
Sbjct: 227 RHSSPTGDATERLAHYFADGLEAR-LAGAASLERRLVASAEERASAMELLEAYQVFMAAC 285
Query: 417 --KWIASLF 437
KW+A F
Sbjct: 286 CFKWVAFTF 294
>12_01_0235 + 1765117-1766770,1766881-1766984
Length = 585
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +3
Query: 237 RHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHXALLSKLPSYGIPEGLC 416
RH GD L H +A+ LE++ A A SL+ + + L +Y + C
Sbjct: 195 RHSSPTGDATERLAHYFADGLEAR-LAGAASLEHRLLASAEERASAMELLEAYQVFMAAC 253
Query: 417 --KWIASLF 437
KW+A F
Sbjct: 254 CFKWVAFTF 262
>10_02_0119 + 5488469-5488647,5489030-5489195
Length = 114
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 181 LYINYSLHHLGKQGSYRDRPIARWVRPVTLLGDRVDVG 68
L +++ L H G + YRD P AR + LGD V+ G
Sbjct: 48 LNMDHELGHYGPRDRYRDPPSARRIEE---LGDSVEHG 82
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 390 SYGIPEGLCKWIASLFWMGGAS 455
S+G+ + + W S FW GGA+
Sbjct: 493 SFGLGQSIGSWAKSPFWKGGAA 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,806,277
Number of Sequences: 37544
Number of extensions: 353948
Number of successful extensions: 905
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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