Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31455
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    52   2e-07
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    41   6e-04
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    41   6e-04
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    41   6e-04
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    35   0.030
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    34   0.052
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    32   0.28 
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    31   0.65 
AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical ...    31   0.65 
AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical ...    31   0.65 
U41533-8|AAA83171.2|  588|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U41533-10|AAA83172.1|  491|Caenorhabditis elegans Hypothetical p...    27   6.0  
AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    27   6.0  
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    27   6.0  
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    27   6.0  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = +2

Query: 8   LTRLYRISYCANRVPSSWKTAHVHPIPK-KGDRSDPSSYRPIAITSLLSKVMERIINIQL 184
           L  LY +S   N +P  WK A+V  IPK K D +  SSYRPI++ S ++K++E+ I ++ 
Sbjct: 367 LAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAI-LKR 425

Query: 185 LKYLGGSPADQ 217
           +K    SPA Q
Sbjct: 426 IKNSIESPAHQ 436


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 38  ANRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKYLG-GSPAD 214
           +  VP  WKT+    I KKGDR +  +YRPI +  +L KV  + +  ++ + L    P +
Sbjct: 425 SRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVE 484

Query: 215 Q 217
           Q
Sbjct: 485 Q 485


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 38  ANRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKYLG-GSPAD 214
           +  VP  WKT+    I KKGDR +  +YRPI +  +L KV  + +  ++ + L    P +
Sbjct: 596 SRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVE 655

Query: 215 Q 217
           Q
Sbjct: 656 Q 656


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 38  ANRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKYLG-GSPAD 214
           +  VP  WKT+    I KKGDR +  +YRPI +  +L KV  + +  ++ + L    P +
Sbjct: 335 SRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPVE 394

Query: 215 Q 217
           Q
Sbjct: 395 Q 395


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 8   LTRLYRISYCANRVPSSWKTAHVHPIPKKG 97
           L+ +Y+ S+  +++P  WK A + PIPKKG
Sbjct: 809 LSIIYKQSFADSKIPDCWKKAIIIPIPKKG 838


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 34.3 bits (75), Expect = 0.052
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 285 WAEALESKGEALAVSLDIAKAFDRVWHXALLSKLPSYGIPEGLCKWI 425
           W ++++   +   + LD +KAFDR+ H  LL KL S    + L  W+
Sbjct: 4   WTKSIDHGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWV 50


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 342 KAFDRVWHXALLSKLPSYGIPEGLCKW 422
           KAFD+V H  LL KL  +GI    C W
Sbjct: 2   KAFDQVNHSLLLQKLHDFGINPLFCNW 28


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y113G7B.12 protein.
          Length = 1042

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 276  TH-RWAEALESKGEALAVSLDIAKAFDRVWHXALLSKLPSYGIPEGLCKWIASL 434
            TH ++ E +E+      +   ++ AFD+V H  L+SKL  + +   L  W   L
Sbjct: 873  THCKYEEYVEAHKRVDLIHFKLSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKL 926


>AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical
           protein C17E7.9a protein.
          Length = 285

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 338 RESLRQGLAXGTSVEATILRNPR 406
           RE++ +GLA GT V  T+ R PR
Sbjct: 246 RENVHEGLADGTQVTTTVFRGPR 268


>AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical
           protein C17E7.9b protein.
          Length = 257

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 338 RESLRQGLAXGTSVEATILRNPR 406
           RE++ +GLA GT V  T+ R PR
Sbjct: 218 RENVHEGLADGTQVTTTVFRGPR 240


>U41533-8|AAA83171.2|  588|Caenorhabditis elegans Hypothetical
           protein R05F9.1b protein.
          Length = 588

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 27/97 (27%), Positives = 40/97 (41%)
 Frame = -2

Query: 421 HLQRPSGIP*DGSFDRSAXCQTLSKAFAISRLTARASPLLSKASAHL*VRYTRRSPAERP 242
           H Q P+G+    ++  SA   +     + S  TAR S L+    +     +T  SP+E P
Sbjct: 103 HSQPPAGLKKVPAY--SATSSSSQAGPSASTSTARKSSLVGGRGSASSSGHTSPSPSESP 160

Query: 241 *RKPYCRSLISWRSSQILQELYINYSLHHLGKQGSYR 131
            R   C S       + L    +  +L H  K G YR
Sbjct: 161 ARNAGCSSSGESNPDRSLTTPPLAPALKHSAKDGHYR 197


>U41533-10|AAA83172.1|  491|Caenorhabditis elegans Hypothetical
           protein R05F9.1a protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = -2

Query: 334 SRLTARASPLLSKASAHL*VRYTRRSPAERP*RKPYCRSLISWRSSQILQELYINYSLHH 155
           S  TAR S L+    +     +T  SP+E P R   C S       + L    +  +L H
Sbjct: 33  STSTARKSSLVGGRGSASSSGHTSPSPSESPARNAGCSSSGESNPDRSLTTPPLAPALKH 92

Query: 154 LGKQGSYR 131
             K G YR
Sbjct: 93  SAKDGHYR 100


>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 274 RYTRRSPAERP*RKPYCRSLISWRSSQI-LQELYINYSLHHLGKQGS 137
           RY +++P  RP R+ +    I  + S + +QE+  N  L  L K G+
Sbjct: 35  RYVQQAPPNRPPRQNHQNGAIGGKKSSVTIQEVPNNAYLETLNKSGN 81


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 274 RYTRRSPAERP*RKPYCRSLISWRSSQI-LQELYINYSLHHLGKQGS 137
           RY +++P  RP R+ +    I  + S + +QE+  N  L  L K G+
Sbjct: 35  RYVQQAPPNRPPRQNHQNGAIGGKKSSVTIQEVPNNAYLETLNKSGN 81


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 274 RYTRRSPAERP*RKPYCRSLISWRSSQI-LQELYINYSLHHLGKQGS 137
           RY +++P  RP R+ +    I  + S + +QE+  N  L  L K G+
Sbjct: 35  RYVQQAPPNRPPRQNHQNGAIGGKKSSVTIQEVPNNAYLETLNKSGN 81


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
            protein 4 protein.
          Length = 2325

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 198  EDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFD 353
            ED+Q  S R Y   HG + G  + Y    WAE    KGE  + ++ I  + D
Sbjct: 1823 EDQQRTS-RNYFDTHGLAEG--VTYFFSVWAETSAGKGEQRSANVTIGPSKD 1871


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,264,837
Number of Sequences: 27780
Number of extensions: 259491
Number of successful extensions: 622
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)