Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31454
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.3
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 1.7
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 27 2.2
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 2.9
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 3.9
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 25 5.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 5.1
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch... 25 6.8
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 6.8
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 25 9.0
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 381 KSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 250
KS S + SG+D F + ++ ++++L GP SP S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = -1
Query: 263 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTIRCASSLV 90
LH + ED+ + G FL S A R+C + + + + L + + P+ + L+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPIASSNTNGLI 182
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 162 LTGGSGATNSV*LAGDD-PMCFFPCCL*AFRHFR 64
+ GSG + AGDD P C FP C+ +H R
Sbjct: 14 IDNGSGFIKAG-FAGDDIPKCLFPTCVGRIKHER 46
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 254 CDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKG-SNSEKADFERAIELT 403
CD L+ GSK+ K++ P K +N+E D +RAIEL+
Sbjct: 222 CDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKPVTNNEDEDIKRAIELS 272
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 167 RLSLGGVALPTAYSLPVTIRCASSLVVCERSATSGGYER 51
R S +ALP PVTI +SS+V+ TS GY R
Sbjct: 506 RKSEWAMALPMENESPVTISLSSSVVLV---CTSAGYVR 541
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = -1
Query: 224 FLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTIRCASSLVVC 84
++PS AGG C+ ++ K L + + + + +P I + C
Sbjct: 388 YIPSIAGGIACVAMSWDHKIGELAAIIIASNFGIPFIISLGWTTASC 434
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 5 LQHRLLVLSSPHLTRTVHSHLKWRNAH 85
L+H LL S L + + S LKWRN H
Sbjct: 369 LRHELL---SAGLQKAIDSLLKWRNRH 392
>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 231 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNSV*LAGDDP 109
GS+S A L+GG ++TG S +N+ D P
Sbjct: 148 GSLSRPFAPPAGLFGGGNKPAAAVTGTSSNSNNASAKSDGP 188
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 240 LGPGSVSTILCGRAALYGGRGDTQTSLTGGSGA 142
+ PGS +L G A L G G +S+ G G+
Sbjct: 436 IAPGSPIIVLGGPALLVGLGGGAASSMNAGEGS 468
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -3
Query: 399 SSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLG--PGS 226
+++ AF+ P SGS E P+ + + TS L G PG+
Sbjct: 295 TTLQSGSQAFTTTVPASGS-VSGTVEVVQPTGGTVTNTVYEGSQTITSTLATASGTVPGT 353
Query: 225 VSTILCGRAALYGG 184
V IL G + +Y G
Sbjct: 354 VEVILPGPSTIYSG 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,696
Number of Sequences: 5004
Number of extensions: 46837
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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