Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31454
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 38 0.005
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 31 0.55
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 31 0.55
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 31 0.73
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 29 1.7
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 3.0
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 28 3.9
11_06_0610 - 25449085-25453284 28 5.2
02_02_0737 - 13529180-13529543,13530661-13531178 28 5.2
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262... 27 9.0
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 362 NSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPL 502
N E + A+E G+G+F ++LA G+ E M+++ +SF+ PL
Sbjct: 195 NMETYTTDEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGPL 241
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 31.1 bits (67), Expect = 0.55
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 383 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFI 493
+ A+ G+G+F +LA G+ SE M+++ +SF+
Sbjct: 35 DEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFV 71
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 341 SDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILP 499
++ E+ E + A+ G+GRF ++LA + +E M+V+ +SF+ P
Sbjct: 6 AEEEEEEEEETYTTDDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGP 58
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 30.7 bits (66), Expect = 0.73
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 40 PHPHRS*PPEVAER-SQTTREEAHRIVTGKLYAVGSATPPSERRLSVPATTIQSRPP 207
P PH+S P +A+R S + +E AH+ ++ S+ PP +RR A+ + PP
Sbjct: 115 PLPHKSPSPPLAQRKSPSPQEAAHQ-------SLASSDPPKKRRRLCKASHMSEPPP 164
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = +2
Query: 389 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILP 499
A+ +G+GR+ ++L+ G+ +E M+++ +SF+ P
Sbjct: 15 ALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGP 51
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 420 TTCCWQYAVSSALPRRWTSSRCRS---SYPSAQC 512
T CCW + AL R WT R RS S+P A+C
Sbjct: 538 TPCCWYFLWLVALNRCWTVYRLRSRGISHP-ARC 570
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 366 ELEPFSGSDFDFLTEGTTPSSAVLEPGPF 280
E+ P SGS F+FLTE T S PG +
Sbjct: 354 EMMPVSGSPFNFLTETTIGSRIDQVPGGY 382
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +1
Query: 37 SPHPHRS*PPEVAERSQTTREEAHRIVTGKLYAVG--SATPPSERRLSVPATTIQSRPPA 210
+P P +S PP E T +A T + Y +TPP+E+ P + S PP
Sbjct: 573 TPSPPKSGPP-AGESPPTPESKASPPPTPEEYTPSPPKSTPPAEKSPPTPESKASSPPPP 631
Query: 211 *DGRN*PGAQESS 249
+ P ES+
Sbjct: 632 APEGHTPSPPEST 644
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +1
Query: 34 TSPHPHRS*PPEVAERSQT-TREEAHRIVTGKLYA----VGSATPPSERRLSVPATTIQS 198
TSP P PP AE S T E++ +G V S++PP E +S P S
Sbjct: 797 TSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSS 856
Query: 199 RPP 207
PP
Sbjct: 857 SPP 859
Score = 27.5 bits (58), Expect = 6.8
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 7 TASTTSVKFTSPHPHRS*PPEVAERSQ--TTREEAHRIVTGKLYAVGSATPPSERRLSVP 180
T+ K + PH S PPE E+S +T EE+ K +++PP+E+ L P
Sbjct: 1070 TSEPPPAKSSPPHEPIS-PPETPEKSYPPSTPEESSPPSVPK-----ASSPPTEKSLPPP 1123
Query: 181 ATTIQSRPP 207
AT S PP
Sbjct: 1124 ATV--SLPP 1130
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +1
Query: 40 PHPHRS*PPEVAERSQTTREEAHRIVTGKL---YAVGSATPPSERRLSVPATTIQSRPPA 210
P P +S PP + T E GK + S++PPS+ P T +S PP+
Sbjct: 868 PPPEKSPPPPETKSPPTLTPEISPPPEGKSPPSHTPESSSPPSKESEPPPTPTPKSSPPS 927
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -1
Query: 212 YAGGRLCMVVAGTLKRL--SLGGVALPTAYSLPVTIRCAS 99
+AGG + AGTL+RL LGG TA++L T+R +S
Sbjct: 186 HAGG-FVLHPAGTLRRLRHGLGGFTTLTAWALRRTLRASS 224
>02_01_0365 +
2621302-2621711,2622442-2622620,2623381-2623496,
2623626-2623964,2624113-2624307,2624505-2624594,
2625288-2625518,2625632-2625952
Length = 626
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 251 CEDSWAPGQ-FLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTIRCASS 96
C +S P FLP+ GRLC + +K L L T++ T++C SS
Sbjct: 187 CHESVNPEHVFLPTTRHGRLCKHCSSKMKILDAINAHLGTSF----TVKCPSS 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,681,352
Number of Sequences: 37544
Number of extensions: 396784
Number of successful extensions: 1242
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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