Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31453
         (308 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    32   0.080
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    32   0.080
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    31   0.18 
03_01_0649 + 4757352-4758167                                           27   4.0  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 32.3 bits (70), Expect = 0.080
 Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 308 RTRRTQK-FQRAIVGASLSDIMAKRNMKPEV 219
           R R T+K + R+IVGASL  I  KR  KPEV
Sbjct: 73  RRRTTKKPYSRSIVGASLEVIQKKRAEKPEV 103


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 32.3 bits (70), Expect = 0.080
 Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -1

Query: 308  RTRRTQK-FQRAIVGASLSDIMAKRNMKPEV 219
            R R T+K + R+IVGA+L  I  KR+ KPEV
Sbjct: 1083 RRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 308 RTRRTQK-FQRAIVGASLSDIMAKRNMKPEV 219
           R R T+K + R+IVGA+L  I  KR  KPEV
Sbjct: 99  RRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129


>03_01_0649 + 4757352-4758167
          Length = 271

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 196 ACSLCALRTSGFILRLAIM 252
           ACS CALRT G +L  A++
Sbjct: 85  ACSPCALRTLGAVLAAALL 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,723,906
Number of Sequences: 37544
Number of extensions: 35401
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)