Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31451
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    28   1.0  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   1.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.4  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   5.4  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   7.2  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   7.2  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   9.5  

>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 371 PGINLRTLSTFGHHRNRLCMVKLTGY 294
           P I+L  +  FG   N +CM +L GY
Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 401 EESIAKAVRYSNVVINLVGRDYETKNFKYND 493
           +ESI+ +   SN+ ++L  R Y+TK  K+N+
Sbjct: 166 KESISSSTN-SNIKLHLAARKYQTKPEKFNE 195


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 233 TVFGCTGFVGRYVCNKLGKIGT 298
           T   CTG V  + C+ L KIG+
Sbjct: 691 TSVNCTGIVLSFCCDNLAKIGS 712


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 32  YELSQYLSHKMAAIALKTQATSKLLHLNGSMSVVYIKA 145
           YE+S+Y  H  A      +  S L  LN   ++++  A
Sbjct: 324 YEMSRYEKHLSAYEKANVKVASSLAFLNSGQAIIFSTA 361


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 23  LYKYELSQYLSHKMAAIALKTQATSKLLHLNGSMSVVYIKAAN-YSSDRKPNLAAYKRGT 199
           L +Y +     +++  I   +  + K LH+   + +      N YSS R    A+   GT
Sbjct: 219 LRRYAIIATCPNQLDLILRYSFISEKFLHIVQFLRISSFNTKNDYSSSRSKTTASSSNGT 278

Query: 200 GGRSSFN 220
               SFN
Sbjct: 279 FASPSFN 285


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 371 PGINLRTLSTFGHHRNRLCMVKLTGYQFF 285
           P I  R L   GH +   C +KL G   F
Sbjct: 152 PSIKTRRLGMRGHSKYHYCGIKLRGQDSF 180


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 362 LCQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 469
           L +   +P HL+ EE    A +Y N + ++   +YE
Sbjct: 272 LQKAFLSPDHLIVEEDFYNASKYLNAISDIPFLNYE 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,182
Number of Sequences: 5004
Number of extensions: 41598
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)