Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31451
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 66 1e-11
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791... 30 1.0
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834 29 3.1
01_01_0043 - 321810-321973,322054-322846 28 4.1
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849... 28 5.4
01_01_0044 - 326337-326500,326618-327398 28 5.4
03_02_0499 - 8908323-8908423,8908822-8908972,8909761-8909867,890... 27 7.2
01_01_0968 - 7618357-7618529,7618891-7619094,7620896-7621139,762... 27 9.5
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/82 (37%), Positives = 55/82 (67%)
Frame = +2
Query: 290 IGTQLILPYRGDFYDAQRLKVCGDLCQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 469
+G+Q+++P+RG + LK+ GDL Q++ Y+ D +SI + SNVVINL+GR+YE
Sbjct: 1 MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60
Query: 470 TKNFKYNDVHVDGVRRIARICR 535
T+N+ +++V+ ++A I +
Sbjct: 61 TRNYGFDEVNHHMAEQLAMISK 82
>12_01_0844 +
7915121-7915225,7915724-7915777,7915888-7915968,
7916164-7916209,7916311-7916405,7916581-7916613,
7916941-7917286,7917372-7917511
Length = 299
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 203 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 364
GR+ VA V G + +GR + LGK G ++I+ Y +A+ +VC ++
Sbjct: 3 GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54
>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
Length = 939
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 301 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLICCKVGF 167
+ ++FS A+ SDK EN G + ++ + TS KVGF
Sbjct: 548 ISSSFSNMTANDHSDKLNVKENVGNTIIHSSRSVDTSNAEHKVGF 592
>01_01_0043 - 321810-321973,322054-322846
Length = 318
Score = 28.3 bits (60), Expect = 4.1
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +2
Query: 197 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 364
+GG + V G TG++GR+V ++G T L+ D AQ L D
Sbjct: 3 SGGDQTTTKSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRD- 61
Query: 365 CQVLFTPYHLLDEESIAKAVRYSNVVINLV 454
V L D S+ +AVR ++VVI+ V
Sbjct: 62 AGVTLLHGDLHDHASLLRAVRDADVVISAV 91
>12_02_0752 +
22784052-22784288,22784531-22784704,22784799-22784930,
22785062-22785439
Length = 306
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 20 QLYKYELSQYLSHKMAAIALKTQATSKLLHLNGSMSVVYIKAANYSSDRKPNL 178
Q K + YLSHK++ I L T KL+ + S+S V + DR P+L
Sbjct: 112 QAPKMKTLGYLSHKISTIELGTMVFQKLVPV--SLSNVMCTVKILALDRAPDL 162
>01_01_0044 - 326337-326500,326618-327398
Length = 314
Score = 27.9 bits (59), Expect = 5.4
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +2
Query: 197 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 364
+GG + I+ V G TG++GR+V ++G T L+ D +Q L+ D
Sbjct: 3 SGGEEKKSRIL--VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRD- 59
Query: 365 CQVLFTPYHLLDEESIAKAVRYSNVVINLVG 457
V L D S+ AVR ++VVI+ +G
Sbjct: 60 AGVTLLHGDLYDHASLLSAVRDADVVISTLG 90
>03_02_0499 -
8908323-8908423,8908822-8908972,8909761-8909867,
8909954-8910170,8910941-8911148,8911261-8911358
Length = 293
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 203 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK 349
GR S +G +A V G T +GR V +L +G + R + +RLK
Sbjct: 14 GRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLK 62
>01_01_0968 -
7618357-7618529,7618891-7619094,7620896-7621139,
7623008-7623151,7623272-7623487
Length = 326
Score = 27.1 bits (57), Expect = 9.5
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Frame = +2
Query: 197 TGGRSSFNGIVATVFGCTGFVGRYVCNK---LGKIGTQLILPYRGDF---YDAQRLKVCG 358
T + S N V G TG +GR++ G L+ P D+ + K+
Sbjct: 2 TKTKKSNNDSTILVIGGTGIIGRHIVAASLDAGHPTLVLVRPTAASAAVDVDSDKAKLLA 61
Query: 359 DLCQVLFTPYH--LLDEESIAKAVRYSNVVINLVG 457
L T + + D ES+ A+R ++VVI+ VG
Sbjct: 62 SLVASGATIVYGDMNDRESLVAAIRQADVVISAVG 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,398,411
Number of Sequences: 37544
Number of extensions: 265270
Number of successful extensions: 562
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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