Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31441
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   5.3  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.3  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    24   7.0  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    24   7.0  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    24   7.0  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    24   9.3  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 292  HCGIDNLLMSWSHDEYLYQFLLHNKSTIP 378
            HCGI  LL+  S  +YL   LL   S +P
Sbjct: 1219 HCGISELLIHLSQAQYL--ILLKLASNLP 1245


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 184 VGCKWADSIVYGPESFKDNPDTYNPKYNTK 273
           VG K+ D I Y     ++  DT++PKY+T+
Sbjct: 54  VGGKY-DGIKYFDHHQREFNDTFSPKYSTR 82


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 220 PESFKDNPDTYN-PKYNTKYGMYKPHCGIDNLLMSWSHDEYLYQFLLHNKSTI 375
           P S    P + N P Y+T +         D+L  S ++  Y Y  LLH ++ I
Sbjct: 432 PSSTPSTPLSDNGPTYSTPHSSLSNFNTCDSLSFSSNNSLYGYSTLLHPRNPI 484


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 3   ESDPDTDLPNIVHAFQ 50
           E DPDTDL +I+H  Q
Sbjct: 182 EIDPDTDLNSILHRKQ 197


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 358 VAGIDTDTHRGSRTSANYRFRSGAC 284
           V GI  D  +G+R  A   F+SG C
Sbjct: 443 VVGIHGDMSQGARLQALNDFKSGKC 467


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 166 VGDTFPVGCKWADSIVYGPESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWS 327
           +G  F  G  +     +GP S ++     + + NTKYG       I N   SW+
Sbjct: 67  IGMPFDTGTSYRPGARFGPSSLREG----SRRINTKYGAVNVPLEI-NPFKSWA 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,492
Number of Sequences: 5004
Number of extensions: 32655
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)