Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31441
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323...   131   2e-31
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830     28   2.9  
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984...    27   5.0  
11_06_0437 - 23533218-23536382                                         27   6.6  

>06_03_0471 +
           21130839-21130869,21131013-21131127,21132228-21132309,
           21132444-21132648,21133237-21133296,21133420-21133472,
           21133589-21133711,21133844-21133913,21134012-21134090,
           21134172-21134253,21134272-21134310
          Length = 312

 Score =  131 bits (317), Expect = 2e-31
 Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 3/100 (3%)
 Frame = +1

Query: 88  DWFHLTGLIHDLGKVM---AFYDEPQWCVVGDTFPVGCKWADSIVYGPESFKDNPDTYNP 258
           DW HLTGLIHDLGKV+   +F + PQW VVGDTFPVGC + +  V+  + FK+NPD  NP
Sbjct: 135 DWLHLTGLIHDLGKVLLHPSFGELPQWSVVGDTFPVGCAFDECNVHF-KYFKENPDYLNP 193

Query: 259 KYNTKYGMYKPHCGIDNLLMSWSHDEYLYQFLLHNKSTIP 378
           K NTK+G Y   CG+DN+LMSW HD+Y+Y     NK+T+P
Sbjct: 194 KLNTKFGAYSEGCGLDNVLMSWGHDDYMYLVAKENKTTLP 233



 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +3

Query: 3   ESDPDTDLPNIVHAFQTAERIREDHPDE 86
           +SDPD D+P I H  QTAE IR+D PDE
Sbjct: 107 DSDPDLDMPQIEHLLQTAEAIRKDFPDE 134


>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
          Length = 763

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +1

Query: 220 PESFKDNPDTYNPKYNTKYGMYKPHCGIDNLLMSWSHDEY 339
           P      P+ Y  +Y  +YG   PH   D L  S   D Y
Sbjct: 86  PPPLGRGPEHYRSRYTGRYGSGFPHSPNDQLHRSMHRDRY 125


>04_04_0850 -
           28697462-28697684,28697894-28697971,28698103-28698495,
           28698590-28698893,28698978-28699188,28699943-28700674
          Length = 646

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
 Frame = +1

Query: 124 GKVMAFYDEPQWCV-----VGDTFPVGCKWADSIVYGPESFKDNPDTYNPKYN-----TK 273
           G   A  D+P W +     VG++  +G  +   ++   + + +   TY   Y+     + 
Sbjct: 507 GFAAALVDDPVWVMNMVPTVGNSTTLGVIYERGLIGSYQDWCEGMSTYPRTYDLIHADSV 566

Query: 274 YGMYKPHCGIDNLLM 318
           + +YK  C +DN+L+
Sbjct: 567 FTLYKDRCQMDNILL 581


>11_06_0437 - 23533218-23536382
          Length = 1054

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 97  HLTGLIHDLGKVMAFYDEPQWCVVGD 174
           H+   IHDL + +AF+   Q C VGD
Sbjct: 512 HIRCKIHDLLRQLAFHLSRQECFVGD 537


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,292,926
Number of Sequences: 37544
Number of extensions: 229443
Number of successful extensions: 442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)