Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31439
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1029 + 22419046-22419331,22419430-22419461 31 0.54
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 30 1.6
12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486... 29 2.2
05_04_0308 - 20081366-20082404,20082702-20083078,20084293-200846... 29 2.2
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 29 2.2
01_01_1117 - 8846649-8847658,8847925-8848024,8848810-8848845 29 2.2
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 29 3.8
01_05_0156 - 18698375-18698596 29 3.8
10_02_0074 - 4965688-4966638,4966877-4966906,4968656-4968927,496... 27 8.7
08_02_0009 + 11216532-11218687,11220727-11225998 27 8.7
08_02_0003 + 11180421-11180757,11180773-11185715 27 8.7
08_02_0002 + 11173365-11173512,11173528-11178470 27 8.7
>10_08_1029 + 22419046-22419331,22419430-22419461
Length = 105
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 242 DVVCDFEANAQFKRDRAVDSEILSILXQRYEDCMMYEQPDHATKCRSLWDKYKSA 406
D V E R++ + E I+ R C E +H KCR L D+Y A
Sbjct: 25 DPVAMLEYREHLVREKWIQIETAKIIRDRLRWCYRIEGVNHHQKCRHLVDQYLEA 79
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 128 DAPVTWFRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEI 307
D P T +QK+Y ++ RV ID ++ +VCD E ++++
Sbjct: 550 DKPRNHLSRTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDE 609
Query: 308 LSILXQRYE 334
+ + + YE
Sbjct: 610 VETINEEYE 618
>12_02_0483 +
19546295-19546397,19547163-19547482,19547606-19548611,
19549890-19549985,19550500-19551551
Length = 858
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 56 WYKTGNP-PDDNVFRAFC-NALYNTVDAPVTWFRETVVEPNQKKYPWY 193
W K+ NP ++ C N YN D W R +V+ +Q K+ W+
Sbjct: 611 WDKSSNPYVARTIYSTSCANKRYNYWDYQKAWERVLLVQNSQMKHSWF 658
>05_04_0308 -
20081366-20082404,20082702-20083078,20084293-20084679,
20085038-20086000
Length = 921
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 56 WYKTGNP-PDDNVFRAFC-NALYNTVDAPVTWFRETVVEPNQKKYPWY 193
W K+ NP ++ C N YN D W R +V+ +Q K+ W+
Sbjct: 706 WDKSSNPYVARTIYSTSCANKRYNYWDYQKAWERVLLVQNSQMKHSWF 753
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 296 DSEILSILXQRYEDCMMYEQPDHATKCRSLWDKYKSAEEAWFIKYGDL 439
D +ILS+L D + PD A S+W A+F+ GDL
Sbjct: 320 DPQILSVLRANDADGLQLLLPDAAAAGDSVWVPVPPDPSAFFVNVGDL 367
>01_01_1117 - 8846649-8847658,8847925-8848024,8848810-8848845
Length = 381
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 56 WYKTGNP-PDDNVFRAFC-NALYNTVDAPVTWFRETVVEPNQKKYPWY 193
W K+ NP ++ C N YN D W R +V+ +Q K+ W+
Sbjct: 231 WDKSSNPYVARTIYSTSCANKRYNYWDYQKAWERVLLVQNSQMKHSWF 278
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 389 DKYKSAEEAWFIKYGDLGAYGDARKAY 469
D ++ E+W +KY D Y DA+ AY
Sbjct: 341 DAKHASNESWPLKYDDYFPYADAKNAY 367
>01_05_0156 - 18698375-18698596
Length = 73
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 407 EEAWFIKYGDLGAYGDARKAYMKQKHRMVWERR 505
EEA ++ G G+ GDAR K + R +W RR
Sbjct: 22 EEAPAMRTGRGGSDGDARDVEEKLRRRSIWTRR 54
>10_02_0074 -
4965688-4966638,4966877-4966906,4968656-4968927,
4969092-4969329
Length = 496
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 131 APVTWFRETVVEPNQKKYP--WYHQ 199
APV W + + +P++ +YP WY+Q
Sbjct: 269 APVPWCADCMAQPDRIEYPAVWYNQ 293
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 155 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILXQRYE 334
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 1524 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 1583
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 155 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILXQRYE 334
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 808 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 867
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 155 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILXQRYE 334
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 745 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 804
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,899
Number of Sequences: 37544
Number of extensions: 271542
Number of successful extensions: 699
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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