Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31437
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0293 + 22018128-22018556                                         29   3.8  
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518...    28   6.6  
01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659...    28   6.6  
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955     28   8.7  
01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602...    28   8.7  

>11_06_0293 + 22018128-22018556
          Length = 142

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 372 AAPPFKPKRITASRQKXAGWLYLLLRTHQTSYHPFVTKTVLG 497
           AA P +P R+   R+    W+  LLR ++T +   +   V G
Sbjct: 43  AALPSRPPRVRLDRRSVVAWIKRLLRVNKTGHSGTLDPKVTG 84


>05_01_0578 +
           5180538-5181385,5182480-5182595,5183397-5183605,
           5184024-5184143,5184247-5184375,5184466-5184591,
           5185550-5185667,5186471-5186680,5186788-5187100,
           5187467-5187560,5187760-5187868,5188322-5188593,
           5188684-5188811,5188977-5189211,5189794-5189982,
           5190069-5190349,5190431-5190698,5190719-5190961,
           5191598-5191680,5192484-5192493
          Length = 1366

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 431 PPRXFLP*SSNAFRFEGWG---SRCTIPSNHQIRLRCPGHYRSPKGTL 297
           PP    P ++ A    G G   +RC +P++  +RLR PG Y S  GTL
Sbjct: 63  PPPPPAPSATCAGDLRGVGDLDTRCVVPAS--VRLRGPGVYISGNGTL 108


>01_05_0671 -
           24164490-24164544,24164920-24165086,24165787-24165941,
           24166291-24166458,24167471-24167552
          Length = 208

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 13  SGRSKLRILDCLLSGLSVNIGIIYTSVEFYLSRTPAR 123
           +G S   +   LL GL    GI++TS  +YL RT  R
Sbjct: 160 NGMSGWLVALILLLGLGAIGGIVFTSYTYYLRRTSGR 196


>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
          Length = 286

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 372 AAPPFKPKRITASRQKXAGWLYLLLRTHQTSYHPFVTKTVLG 497
           AA P +P R+   R+    W+  LLR ++T +   +   V G
Sbjct: 82  AAYPSRPPRVRLDRRWVVAWIKRLLRVNKTGHSGTLDPKVTG 123


>01_01_0778 +
           6024154-6024315,6024725-6024802,6024909-6025071,
           6025484-6025788,6025897-6025961,6026570-6026763,
           6027233-6027441,6028147-6028325,6029345-6029459,
           6029520-6029558
          Length = 502

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 228 PFTRKPTGTKVGVFWIPKGFCLRKGSFGTT 317
           PF RKPT    G+F++P G  + +   G++
Sbjct: 165 PFYRKPTPAMGGLFFVPIGIFVARRQVGSS 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,110,634
Number of Sequences: 37544
Number of extensions: 454148
Number of successful extensions: 878
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)