Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31437
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z78066-2|CAB01524.2|  257|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z69787-2|CAA93635.2|  474|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z68105-4|CAA92120.2|  304|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +3

Query: 474 FVTKTVLGFDFYYTMLFLRRKIQS*TFLKYVTLLKITVPTYN*FTMYLRKTYSKNYLHNC 653
           F+ KTV  + FY+ +L    K+Q  +F +YV  L+     +    + L   Y++ +L + 
Sbjct: 6   FIVKTV--YTFYWVVL---EKVQLHSFKQYVVALRFESVQFKNPPILLLLIYNRIFLQSI 60

Query: 654 TIIIKL 671
           TI+I L
Sbjct: 61  TILILL 66


>Z78066-2|CAB01524.2|  257|Caenorhabditis elegans Hypothetical
           protein W06A7.4 protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 406 AVMRFGLKGGAAVVPFRATIK*DFAVLDIIVVPKEPFLKQKPLGIQKTPTFVPV 245
           A+ RFGL G  + VP    +  +  +L I+     PF+K   +G   + T +P+
Sbjct: 23  AISRFGLFGVPSAVPMSILLNYNGIILLIVGSSIYPFIKVNVVGSVASDTVLPM 76


>Z69787-2|CAA93635.2|  474|Caenorhabditis elegans Hypothetical
           protein C44C10.3 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 101 ICPEPQRVNA*KLFGNVFVNQAKE*IITLNS*TVNMYTPP*VSLYKKTHWHKGRCFLDTQ 280
           +C     +N+  L GN+++NQA   I+ + S  V ++       +K+   H+G       
Sbjct: 287 VCGFANDLNSNSLAGNLYLNQALFGILLVLSKIVLLFVDTKFENFKRRTLHQGSQSGMII 346

Query: 281 RFLFKEGFLW-DY 316
            FL    FLW DY
Sbjct: 347 SFLILAIFLWIDY 359


>Z68105-4|CAA92120.2|  304|Caenorhabditis elegans Hypothetical
           protein F13E6.5 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/74 (24%), Positives = 36/74 (48%)
 Frame = +3

Query: 444 LRTHQTSYHPFVTKTVLGFDFYYTMLFLRRKIQS*TFLKYVTLLKITVPTYN*FTMYLRK 623
           +RT +TS+    T       F +  ++LRR  ++    + +T+  I VP+Y  +T++   
Sbjct: 192 IRTARTSFPSGHTAAAFHV-FLFVYIYLRRMAENTGIKEIITIRNILVPSYALWTVFCAV 250

Query: 624 TYSKNYLHNCTIII 665
           T   +  H  T ++
Sbjct: 251 TRVTDNWHFPTDVL 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,576,443
Number of Sequences: 27780
Number of extensions: 409503
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)