Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31436
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   4.2  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.6  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    24   9.7  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    24   9.7  
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    24   9.7  

>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 325 IHQNXRLRTRGPPSIGFDIIKALIP 251
           IH +  L  +  PS GF +I++L+P
Sbjct: 402 IHASSTLVLKKDPSFGFSVIESLMP 426


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 147 NGSIYQFWFLKSYSVTWITVVILELIHAIRTLTSD 251
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 147 NGSIYQFWFLKSYSVTWITVVILEL 221
           NG + +F+FL S ++ W+   +LE+
Sbjct: 22  NGKMKEFFFLVSETMDWLNEHMLEV 46


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 437 LPVTTMVVAETTIES**GRHLKDASPVLDHAICKSYPDSSKLXSSDAR 294
           LP  ++  A+TT+E    R L  +  ++D  IC ++    ++ +  AR
Sbjct: 260 LPYLSLEEAKTTLEVHTDRSLFFSGQIIDFTICYTHNHHRRIHNIKAR 307


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +2

Query: 338 CRSHGQVPATHLSNVCLINFRW*FLRLPWLSRVTGNQ 448
           C+   +    H+      NF+  +  LPW  R+ G Q
Sbjct: 71  CQGQNKESLIHMEEDASTNFKLRYYVLPWSRRLQGYQ 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,404
Number of Sequences: 5004
Number of extensions: 33288
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)