Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31436
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640...    29   1.4  
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    28   4.2  
11_06_0145 - 20615044-20617167,20617444-20618076                       27   9.6  
05_03_0449 - 14161812-14162902,14163121-14163153,14164248-141644...    27   9.6  

>02_02_0054 -
           6398829-6399047,6399470-6399676,6399858-6400557,
           6400927-6401120
          Length = 439

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 324 IWITFADRMVKYRRRIFQMSALSTFDGSFCDYHGCHG*RGIKVRF 458
           +WITFA  MV    +   +++  T DG     H   G  GI V+F
Sbjct: 158 LWITFAKSMVIRLTQELLVASDKTIDGRGAQVHIARGGAGITVQF 202


>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 221 NTCNQNSDQ*WDECFYYIKTNRRR 292
           N+ N++SDQ   +C+Y +KTNR++
Sbjct: 741 NSLNRSSDQ-ISKCYYSLKTNRKQ 763


>11_06_0145 - 20615044-20617167,20617444-20618076
          Length = 918

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 70  LPVVICLSQRLSHACLSASRIKAIP 144
           +PV IC+   L +  LS +RIK +P
Sbjct: 556 IPVEICMQVNLRYLNLSNNRIKTVP 580


>05_03_0449 -
           14161812-14162902,14163121-14163153,14164248-14164457,
           14166348-14167011,14167129-14167287,14167449-14167563,
           14167672-14167867,14167965-14168286,14168695-14168865,
           14169486-14169495,14169932-14170285,14172429-14172553
          Length = 1149

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -3

Query: 301 TRGPPSIGFDIIKALIPSLVRVLIACISSRITTVIQVTE*DLRN 170
           ++GPP+  +++++A+   L  VL AC   R+++   +T   LRN
Sbjct: 668 SQGPPATAWEVLEAVPFVLETVLAACAHGRLSSRDLIT--GLRN 709


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,568
Number of Sequences: 37544
Number of extensions: 217166
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)