Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31434
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.18
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.55
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 28 1.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 2.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.9
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 26 5.1
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 26 5.1
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 5.1
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 276 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 419
P P ++P V P +PV P T++ + P ++P +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.5 bits (63), Expect = 0.55
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 249 TMQVKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 395
T VKH P PP P+ +SP MP PLT S T S PE+ P S
Sbjct: 737 TPAVKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 294 SPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLV 473
SP + +PV P QPL L + T P + + L++PS+ D + NSS +
Sbjct: 281 SPFF--TAPVEPNQPLQPLRPSMTGPVPSSMGSEATLNMPSTYGIDSNLYTNSNSSSIVQ 338
Query: 474 N 476
N
Sbjct: 339 N 339
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 627 SQSNNIAAYITAHLLPSGCSSVPPISWDQSQTS*KALATVMT 752
S +++ A Y T+ LLPS S P+S S T+ A +T +T
Sbjct: 268 SATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLT 309
Score = 27.5 bits (58), Expect = 2.2
Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 1/200 (0%)
Frame = +3
Query: 156 SHVHGTTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQ 335
S V +T +T + ++ ++T + + T + P LS +
Sbjct: 247 STVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASST 306
Query: 336 PLTSLTLTQTASGPETSPAS-DNLSVPSSDTWDKT*ILSINSSLTLVNSDTLSDQPWVVP 512
PLTS+ T T S T +S + + ++ + T + S+NS T S + + V
Sbjct: 307 PLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNS--TTATSASSTPLTSVNS 364
Query: 513 EVEESMTSKPLGMQSYQQ*LWFLI*EYCIVKRLYNSRNSQSNNIAAYITAHLLPSGCSSV 692
S +S PL S + + S S+ +Y T+ +LP+ S
Sbjct: 365 TTATSASSTPL--TSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 422
Query: 693 PPISWDQSQTS*KALATVMT 752
P+S S T+ A +T ++
Sbjct: 423 TPLSSANSTTATSASSTPLS 442
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 336 PLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLVNSDT 485
PLTS T + S T+P+ + SV + + T + S NS+ S T
Sbjct: 504 PLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASST 553
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 28.3 bits (60), Expect = 1.3
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 1/146 (0%)
Frame = +3
Query: 120 HATLMMEKLVP*SHVHGTTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSP 299
H + P H + S T T +S S T P + + P+PP SP
Sbjct: 259 HGPAKQISVQPSEHPKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSGSP 318
Query: 300 IYLPVSPVMPVQPLTSLTLT-QTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLVN 476
PVS + + ++ L+ + A + ++ N+ P S S + T +
Sbjct: 319 SKKPVSELEELHTAGNVNLSARRALFEKKESSTKNVENPVSHHLKSPVRTSFPPASTTAS 378
Query: 477 SDTLSDQPWVVPEVEESMTSKPLGMQ 554
D P VP V++ T+KP+ Q
Sbjct: 379 K---QDSPSTVP-VDKQETAKPINKQ 400
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +3
Query: 342 TSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLVNSDTLSDQPWVVPEVE 521
T+LT T SG ET P + + PS T + + SLT + T S P V VE
Sbjct: 722 TTLTSIVTHSGSETGPTTVYIETPSVSATTTTTTIGYSGSLT--TTLTGSSGPVVTNTVE 779
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 95 NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYASQ 262
NQ S D+D+ ASS++S A D+D N+ +A GD +SQ
Sbjct: 3 NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQ 59
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 390 ASDNLSVPSS-DTWDKT*ILSINSSLTLVNSDTLSDQPWVVPEVEESMTSK 539
A ++VPSS D W I + S+ V++D L W++ EVE TS+
Sbjct: 18 AGMEINVPSSSDVWTSGHIEPLEWSV--VSTDPLQANVWLINEVEYPPTSR 66
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 533 FEAAWDAILPAVTLVSYMRVLHRQEIVQLSQQPKQQHRCLHHRSLTSF 676
F A+ D+ + + S+ +L R L+ PK+Q LH RSLT++
Sbjct: 235 FNASQDSPKRSPSKGSWSSILRRPS---LTYSPKRQSTGLHRRSLTNY 279
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +2
Query: 65 SAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQ 244
S +PSV+I +EIP + + + A DY+ T I++V ++ + S
Sbjct: 80 SVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVV--ILSS 137
Query: 245 GDYASQASAVAQTA 286
Y + SA++ A
Sbjct: 138 SPYENILSALSLAA 151
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 324 MPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLT 467
+P Q +++L + S P S S + S+PSS D + S SLT
Sbjct: 135 LPSQEISTLLSSSLTSSPSNSGLSLDKSLPSSPKGDSPSLSSSLPSLT 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,093
Number of Sequences: 5004
Number of extensions: 61002
Number of successful extensions: 232
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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