Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31432
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   6.5  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   6.5  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   8.7  

>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 540 WNTYNSAHFTRNFP 499
           WN+YN AHF    P
Sbjct: 403 WNSYNQAHFNEAHP 416


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 322  RFDLTVNIFPYL*QGFSSPSVNLT*KTAVHII 417
            RF+L +    Y+ Q   S SVNLT   A+ II
Sbjct: 940  RFNLIIGSEYYVPQSHQSDSVNLTSNDAIKII 971


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -2

Query: 360 LKIGKNIHREIEPL----LSEHKSSKTKHDFYMASTVILARKPRITIRHLQ 220
           +++G  ++ E+E L    + + +  K K D       ILA KPR+T  ++Q
Sbjct: 108 VRVGYYVNNEMEGLNLQEMDDAEIKKVKVDISKVWRSILAEKPRVTRFNIQ 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,901
Number of Sequences: 5004
Number of extensions: 54342
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)