Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31432
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0343 + 9163976-9165220                                           30   1.6  
01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600...    29   2.9  
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062...    27   8.8  
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031...    27   8.8  

>02_02_0343 + 9163976-9165220
          Length = 414

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 420 CTPFLIDRLDPLQQAETKALVSFAYCAENFV*NAPNYKCSMSYCLLNIYPRSRAI 584
           C    +D  DPL     K LV    C EN      NY CS++  LL+   R++ +
Sbjct: 228 CEDLTVDGFDPLITLNLKELVVLNNCYEN------NYSCSIAADLLSEMTRTKVL 276


>01_06_1642 +
           38857326-38857581,38858577-38858818,38859001-38860004,
           38860170-38860587,38860673-38860789
          Length = 678

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 59  SSRRKQHDHGWTSRWAFSYMAMQIL 133
           S R+K+HD+ W SRW   ++ +  L
Sbjct: 608 SRRQKEHDNFWNSRWTRKFLFLLCL 632


>07_03_0572 -
           19604643-19604745,19604947-19605629,19605786-19606284,
           19606370-19606878,19607110-19607148,19607347-19607411,
           19609081-19609201,19610229-19610315,19611096-19611179,
           19611925-19612175,19612869-19612962,19613043-19613284,
           19614187-19614505
          Length = 1031

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 154 K*DWIVRQNLHSHVTKSPSRRPAMVVLFTPRG 59
           K +W +++NL   +  +P   PA+V+LF P+G
Sbjct: 601 KLEWYIQRNLAKLIEDNP---PAIVLLFEPKG 629


>05_07_0059 +
           27402365-27402733,27402848-27402982,27403070-27403183,
           27403297-27403449,27403544-27403644,27403945-27404041,
           27404542-27404651,27404775-27404878,27405129-27405308,
           27405398-27405741,27405841-27405905,27405981-27406450,
           27406939-27407793,27408045-27408116,27408475-27408575,
           27409069-27409170,27409295-27409456,27409665-27411230,
           27411384-27411602,27413924-27414198,27414291-27414596,
           27414727-27415012,27415085-27415087,27415162-27415416,
           27415537-27415803
          Length = 2236

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 528 NSAHFTRNFPHSTQRKPMLLFPPAAEDPNDQ*EKGYIDNMNGCLLCQVNGWTRESLLKI 352
           +S   T  FP   + +PM +     E    +  K ++    G L C+  G TR+ +LK+
Sbjct: 325 HSRFSTNTFPSWDRAQPMRVLGHNGEINTLRGNKNWMKAREGLLKCEGLGLTRDEMLKL 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,538
Number of Sequences: 37544
Number of extensions: 327819
Number of successful extensions: 922
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)