Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31432
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-5|AAG23995.1|  343|Caenorhabditis elegans Serpentine re...    29   2.0  
U97003-2|AAB52271.2|  376|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    28   4.5  
AC090999-11|ABD63207.1|  356|Caenorhabditis elegans Hypothetical...    28   4.5  
U15167-1|AAB66360.1|  445|Caenorhabditis elegans serotonin recep...    28   6.0  
AC084154-13|AAK29875.2|  445|Caenorhabditis elegans Serotonin/oc...    28   6.0  

>AF016449-5|AAG23995.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein185 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 406 VHIIDVPLFSLIVWILCSRRKQKHWF---PLRTVRKISCKMRRIISVPCPTVSL 558
           V I +V  F++I+ +LCS + Q H       R    I  K+   I +P PT+++
Sbjct: 207 VVISEVFFFTMIILLLCSEQVQNHQLSSGAFRARNMILFKLHAQIIIPLPTLAI 260


>U97003-2|AAB52271.2|  376|Caenorhabditis elegans Hypothetical
           protein F47C10.1 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 75  STTMAGRLDGLLVTWLCKFCLTIQSYLFYQL 167
           S   A R+  +LVT +C  CLT + Y+  Q+
Sbjct: 256 SKDYADRIQEMLVTKICGLCLTPEEYILTQI 286


>Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical
           protein T03F7.4 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 487 LRTVRKISCKMRRIISVPCPTVSLISTPVV 576
           LRT  + S K+  +  +PCPT+     P++
Sbjct: 160 LRTPNQDSAKLEMLKIIPCPTLEYFELPII 189


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
           protein F40E12.2 protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 405 GCLLCQVNGWTRESLLKIG-KNIHREIEPLLSEHKSSKTKHDFY 277
           G LL   NG   ++ L +  +N+H+E   L+ +  + K  HD+Y
Sbjct: 829 GALLDVCNGLDGKTCLHVAIENLHKETIELMIQSGADKYAHDYY 872


>AC090999-11|ABD63207.1|  356|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.4 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -2

Query: 393 CQVNGWTRESLLKIGKNIHREIEPLLSEHKSSKTKHDFYMASTVILARKPRITIRHLQV* 214
           C +N  T + ++   +NI+  + PL+ E KS+   +D  +    +L  K R+ I   +  
Sbjct: 49  CAINE-TVDGIIDKLQNINTLLNPLIGEPKSNHGAYDDDILQLDLLREKLRLQIDKFREI 107

Query: 213 SYD 205
           SYD
Sbjct: 108 SYD 110


>U15167-1|AAB66360.1|  445|Caenorhabditis elegans serotonin receptor
           precursor protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 118 HVTKSPSRRPAMVVLFTPRGCQIPDWFPA 32
           ++T SPS +PA ++    RG  + D FPA
Sbjct: 8   NLTASPSSQPATLLSAVARGTHLVDQFPA 36


>AC084154-13|AAK29875.2|  445|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 4 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 118 HVTKSPSRRPAMVVLFTPRGCQIPDWFPA 32
           ++T SPS +PA ++    RG  + D FPA
Sbjct: 8   NLTASPSSQPATLLSAVARGTHLVDQFPA 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,685
Number of Sequences: 27780
Number of extensions: 298111
Number of successful extensions: 736
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)