Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31430
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    28   1.2  
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    26   3.8  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   6.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   8.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.8  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 525 SKVFSFINAVIITCSQNEVKLVEF--DFQMRNLRYKITTRCCV 403
           S  F F+N V+ TC+ NE+K+  F   +Q     YK+  R CV
Sbjct: 342 STAFEFVN-VLRTCA-NELKMTSFVTAYQASEKIYKLFDRICV 382


>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 428 YLRFLIWKSNSTSFTSF*EQVIMTALMKLKTLEGHLQDLKVLVNQKIKFEQ 580
           Y R L+W+          E   ++   ++  L+G + DL V + +K+K E+
Sbjct: 35  YARKLLWEEGKCQLDKVAEPQGLSK--RIMDLQGRIYDLNVTMEKKLKIEE 83


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 404 TQHLVVILYLRFLIWKSNSTSFTSF*EQVIMTALMKLKTLEG 529
           ++HL  +L  R L W S S  + S  E +   A++K + L G
Sbjct: 31  SKHLYNLLITRTLTWPSLSIQWLSAMESITEKAVLKNRLLLG 72


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 258 VNSSPESAKSCQSTSYVFHPTSFGNSWFSSTS*SKCDKY*S*SCTPARQRNILWL 422
           + SSP S  SC   +  F  TS     FS TS     K    + TP   +N+L++
Sbjct: 71  LTSSPTSPDSCTFGNMTFQWTSLLQDVFSGTSAFAIFKRFPLTDTPLTLQNMLYI 125


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 420  TTRCCVGVLECSSMTSIYHICFRKLRK 340
            T   C+G+L+ SSM ++Y I  R + K
Sbjct: 1256 TLEKCIGLLDESSMQTLYPILNRMIAK 1282


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 247  AVAPLTAALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTSHRAAL 393
            A  P    +S P P S  PM + PP +     P     +V N   R+AL
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRSAL 1752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,851
Number of Sequences: 5004
Number of extensions: 50221
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)