Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31430
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    30   1.7  
12_02_0674 - 21745321-21746223,21746229-21747608                       28   5.2  
02_05_0883 - 32481502-32483085                                         28   5.2  
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283...    28   6.8  
05_04_0263 + 19534563-19535522                                         27   9.0  

>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
            25400758-25400816,25400920-25401748,25402554-25402898,
            25402973-25403435,25403537-25403640,25403692-25403901,
            25404933-25405088,25405774-25406052,25406237-25406986,
            25407141-25407232,25407977-25408361,25408672-25408752,
            25409196-25409354,25409399-25409506,25409604-25409666,
            25409764-25409835,25409932-25410366
          Length = 1758

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +1

Query: 259  LTAALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTSHRAALQH--ANATSCGYFVS 432
            LTA L++P+  S  P CS+P VS    +  L    V+ T  R  LQ    NA+  G    
Sbjct: 790  LTAGLAEPS--SAFPGCSVPEVSHPRSWSSL---RVMTTEQRLELQQRIMNASENG---- 840

Query: 433  QIPHLEIKFYQFYLVLRTSDNDCINEAEN 519
            ++P  + +     L L      C++ ++N
Sbjct: 841  KLPFRDCRIIARELNLSVQQVLCVSSSQN 869


>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 252 CSVNSSPESAKSCQSTSYVFHPTSFGNSWFSSTS 353
           C V+S   + K   STS  F PTSF N   +STS
Sbjct: 698 CKVSSPTGACKFSTSTS-TFTPTSFSNDLTASTS 730


>02_05_0883 - 32481502-32483085
          Length = 527

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
 Frame = +1

Query: 247 AVAPLTAALSQPNPVSQLPMCSIPPVSATAGFPQLPEANVINTS-HRAALQ----HANAT 411
           A A L+A LS P       +  +  +SA A  P  P A  +  S H   L+    H   +
Sbjct: 83  AAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKLFPSHLLLS 142

Query: 412 SC---GYFVSQIPHLEIKFY 462
           +C    YF S++PHL ++ +
Sbjct: 143 TCLVRFYFASRLPHLALQLF 162


>10_01_0267 -
           2828966-2829340,2831164-2831629,2833390-2833487,
           2833782-2834078,2834287-2834694
          Length = 547

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 256 PLTAALSQPNPVSQLPMCSIPPVSATA 336
           P  AALS P  ++  P   +PP ++TA
Sbjct: 486 PAAAALSPPGAIAPAPASMLPPFNSTA 512


>05_04_0263 + 19534563-19535522
          Length = 319

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 346 QLPEANVINTSHRAALQHAN-ATSCGYFVSQIPHLEI 453
           ++P+A  I+    A L+H N  TSCG+ +SQ+  + +
Sbjct: 159 RMPQA--ISLGRTAVLKHVNFLTSCGFLLSQVSKMVV 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,333,056
Number of Sequences: 37544
Number of extensions: 299165
Number of successful extensions: 855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)