Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31427
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   0.81 
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    24   7.6  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    24   10.0 
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    24   10.0 
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    24   10.0 

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +3

Query: 39   AAKYHVSANVEYARYYVSFIIQFQFHRALCQLAGEHAAGDPNKKLVDCDIYQSVAAGNAL 218
            A +  +  + +Y ++Y+  ++QF+    L +L G+  +G   ++ V   +Y     G A+
Sbjct: 919  AGEVRLGKSDDYDKWYIDILVQFREEEGLQKLTGQRQSG--GERSVSTIMYLLSLQGLAI 976

Query: 219  A 221
            A
Sbjct: 977  A 977


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 290 LPLSGQRLHRVRPGLRRTHLQHVCE 216
           +PL G   +R++  LR +HL  VCE
Sbjct: 78  VPL-GTNFNRIKHDLRGSHLHTVCE 101


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 301 TASWSTSGRSTTGCGRRTSGPASTSAGNRP 390
           TA+ +    S++    RTS P +++A N+P
Sbjct: 413 TANDTNGSSSSSSSNPRTSSPLASNAENKP 442


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 367 SPVRWFSARSQSWSGRKYSRRPSAFISRCPVSASIASGQGLDEPIFSMFASAFP 206
           SP      +  +++GRK SRRPS+  S  P+ +        D    S  +S FP
Sbjct: 167 SPPSSVHMKPSAFNGRKVSRRPSS--SPPPIPSIPHETTSSDTQKKSSVSSGFP 218


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 328 SGRKYSRRPSAFISR 284
           + ++Y RRPSAFI R
Sbjct: 330 TSKRYVRRPSAFIPR 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,326,389
Number of Sequences: 5004
Number of extensions: 22303
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)