Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31424
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.56
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 2.3
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 27 2.3
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 27 3.0
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 5.2
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 6.9
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 25 6.9
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.1
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 9.1
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch... 25 9.1
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 9.1
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.56
Identities = 23/100 (23%), Positives = 41/100 (41%)
Frame = +3
Query: 216 TDPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKAPIRKKPTSNGLSN*P 395
++P P +C + G GS + + P+V + + PI TS+ +N
Sbjct: 162 SNPLPTTSTSCTTSTSIPPTG-GSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS 220
Query: 396 DMAASTTCCWQYAVSSALPRRWTSSRCRSSYPRHSATYTS 515
+ ++T C S+++P +SS P T TS
Sbjct: 221 PLPTTSTSC---TTSTSIPTGGSSSLSTPITPTVPPTSTS 257
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/85 (22%), Positives = 35/85 (41%)
Frame = +3
Query: 216 TDPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKAPIRKKPTSNGLSN*P 395
+ P P +C + G GS + + P+V + + PI TS+ +N
Sbjct: 105 SSPLPSTSTSCTTSTSIPPTG-GSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSN 163
Query: 396 DMAASTTCCWQYAVSSALPRRWTSS 470
+ ++T C S+++P SS
Sbjct: 164 PLPTTSTSC---TTSTSIPPTGGSS 185
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = -1
Query: 255 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTIRCASSLV 82
LH + ED+ + G FL S A R+C + + + + L + + P+ + L+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPIASSNTNGLI 182
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 255 KGDLQLNGPGSKTAELGVVPSVKKSKSDPEKAPIRKKPTSN 377
K D+ L PGS + + V + KS+ D + P+ ++P+S+
Sbjct: 68 KDDVNLVIPGSTWSHIEGVYEMLKSRHDRQNEPVIEEPSSH 108
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 154 LTGGSGATNSV*LAGDD-PMCFFPCCL*AFRHFR 56
+ GSG + AGDD P C FP C+ +H R
Sbjct: 14 IDNGSGFIKAG-FAGDDIPKCLFPTCVGRIKHER 46
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 159 RLSLGGVALPTAYSLPVTIRCASSLVVCERSATSGGYER 43
R S +ALP PVTI +SS+V+ TS GY R
Sbjct: 506 RKSEWAMALPMENESPVTISLSSSVVLV---CTSAGYVR 541
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 377 RAIELTGYGRFHYMLLAVCGLVSTSE-EMDVISMSFILPSAQCDLYLTTQTKGWL 538
R + +T + R Y+ + + ++S+ + + S + ++ S C+ L TKGWL
Sbjct: 1340 RLVVVTKWSRIVYLDVGMMRVLSSDQLPLQCGSATSVVVSEGCNWALIGTTKGWL 1394
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = -1
Query: 216 FLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTIRCASSLVVC 76
++PS AGG C+ ++ K L + + + + +P I + C
Sbjct: 388 YIPSIAGGIACVAMSWDHKIGELAAIIIASNFGIPFIISLGWTTASC 434
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 343 SGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 242
SG+D F + ++ ++++L GP SP S L
Sbjct: 139 SGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = -1
Query: 492 EGRMNDIEMTSISSEVLTRPHTANSM*WKRPYPVSSIARSKSAFSELEPSPDRIS 328
+ R D+E + S + + ++ NS+ +RP S + A L+ P+++S
Sbjct: 95 DARNTDVESYAASYKTQSSSNSVNSLPMRRPTLDRSYSAPMIAAKNLQSDPEKMS 149
>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 223 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNSV*LAGDDP 101
GS+S A L+GG ++TG S +N+ D P
Sbjct: 148 GSLSRPFAPPAGLFGGGNKPAAAVTGTSSNSNNASAKSDGP 188
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 232 LGPGSVSTILCGRAALYGGRGDTQTSLTGGSGA 134
+ PGS +L G A L G G +S+ G G+
Sbjct: 436 IAPGSPIIVLGGPALLVGLGGGAASSMNAGEGS 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,622
Number of Sequences: 5004
Number of extensions: 61183
Number of successful extensions: 193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -