Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31424
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 65 4e-11
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 65 5e-11
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 62 3e-10
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 50 2e-06
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 33 0.14
02_05_1217 + 34999631-34999945,35000670-35000835,35001908-350020... 31 0.76
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 31 1.0
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 2.3
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 29 2.3
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 29 3.1
11_06_0610 - 25449085-25453284 28 7.1
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 28 7.1
02_02_0737 - 13529180-13529543,13530661-13531178 28 7.1
12_02_0778 + 23074463-23076411,23076859-23077072,23077824-230778... 27 9.4
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/81 (33%), Positives = 50/81 (61%)
Frame = +2
Query: 344 EGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLYLTTQ 523
E S + A+ +G+GR+ ++L+ G+ +E M+++ +SF+ PS Q + LT+
Sbjct: 3 EEDQSATYSVDDALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSH 62
Query: 524 TKGWLNSIIFIGMMVGAYAWG 586
+ + SI+F+GM++GAY WG
Sbjct: 63 QESMITSIVFVGMLIGAYTWG 83
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 64.9 bits (151), Expect = 5e-11
Identities = 26/71 (36%), Positives = 46/71 (64%)
Frame = +2
Query: 374 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLYLTTQTKGWLNSIIF 553
+ A+ G+G+F +LA G+ SE M+++ +SF+ S Q + L+ Q + + S++F
Sbjct: 35 DEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFVGQSVQAEWELSAQAESLITSVVF 94
Query: 554 IGMMVGAYAWG 586
+GM+VGAY+WG
Sbjct: 95 VGMLVGAYSWG 105
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 62.5 bits (145), Expect = 3e-10
Identities = 25/89 (28%), Positives = 51/89 (57%)
Frame = +2
Query: 323 EIEIRSGEGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQC 502
+ + + N E + A+E G+G+F ++LA G+ E M+++ +SF+ P +
Sbjct: 185 QTRLYKADAVNMETYTTDEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGPLVRE 244
Query: 503 DLYLTTQTKGWLNSIIFIGMMVGAYAWGF 589
+ ++ + + L+S++F GM++GA WGF
Sbjct: 245 EWNISAENESLLSSVVFAGMLIGASGWGF 273
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/81 (29%), Positives = 46/81 (56%)
Frame = +2
Query: 344 EGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLYLTTQ 523
E E + A+ G+GRF ++LA + +E M+V+ +SF+ PS + + ++
Sbjct: 10 EEEEEETYTTDDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGPSVKAEWGVSGA 69
Query: 524 TKGWLNSIIFIGMMVGAYAWG 586
+G ++S++F GM++GA G
Sbjct: 70 AEGLVSSVVFAGMLIGACLGG 90
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -1
Query: 621 ALACDQASLPLNPQAYAPTIIPMKIILFSHPLV*VVRYKSHCAEGR--MNDIEMTSISSE 448
A + D+ +P PQ P I+LF P++ VR + + E D++M I
Sbjct: 205 ATSLDEEDVP--PQEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLR 262
Query: 447 VLTRP 433
VLTRP
Sbjct: 263 VLTRP 267
>02_05_1217 +
34999631-34999945,35000670-35000835,35001908-35002005,
35002245-35002319,35002413-35002481,35002552-35002637,
35002710-35002827,35003575-35003902,35003995-35005682,
35005822-35005881,35005953-35006027,35006105-35006197,
35006298-35006372,35006464-35006532,35006614-35006682,
35006994-35007113
Length = 1167
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 264 LQLNGPGSKTAELGVVPSVKKSKSDPEKAPIRKKPTSNGLSN 389
+Q+N GS +LG VK S P K+ +RK+P +N + N
Sbjct: 499 IQVNFDGSSGGKLGA-QKVKHHTSAPNKSVVRKEPRNNYIPN 539
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 32 PHPHRS*PPEVAER-SQTTREEAHRIVTGKLYAVGSATPPSERRLSVPATTIQSRPP 199
P PH+S P +A+R S + +E AH+ ++ S+ PP +RR A+ + PP
Sbjct: 115 PLPHKSPSPPLAQRKSPSPQEAAHQ-------SLASSDPPKKRRRLCKASHMSEPPP 164
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 411 TTCCWQYAVSSALPRRWTSSRCRSSYPRHSA 503
T CCW + AL R WT R RS H A
Sbjct: 538 TPCCWYFLWLVALNRCWTVYRLRSRGISHPA 568
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 298 SLASYLQLRNRNPIRRRLQ-FGKSRLRTGYRTNRIWPLPLHAV 423
SLA + N +P+ RLQ FG+ L +TN I P+ A+
Sbjct: 379 SLADVVAFNNAHPVEERLQDFGQPDLIAAQKTNGIGPVEKAAI 421
>01_01_0161 -
1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 433 RSRQHFRGDGRHLDVVHPTLGTVRLIPHHSD*RMA---KQYNLHR 558
RS H + D H T+GT R+ PHHS R+A +Y HR
Sbjct: 826 RSYAHVQVDSPGTATRH-TVGTTRITPHHSRDRLATVRDEYPTHR 869
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +2
Query: 29 SPHPHRS*PPEVAERSQTTREEAHRIVTGKLYAVG--SATPPSERRLSVPATTIQSRPPA 202
+P P +S PP E T +A T + Y +TPP+E+ P + S PP
Sbjct: 573 TPSPPKSGPP-AGESPPTPESKASPPPTPEEYTPSPPKSTPPAEKSPPTPESKASSPPPP 631
Query: 203 *DGRN*PGAQESS 241
+ P ES+
Sbjct: 632 APEGHTPSPPEST 644
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 26 TSPHPHRS*PPEVAERSQT-TREEAHRIVTGKLYA----VGSATPPSERRLSVPATTIQS 190
TSP P PP AE S T E++ +G V S++PP E +S P S
Sbjct: 797 TSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSS 856
Query: 191 RPP 199
PP
Sbjct: 857 SPP 859
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -3
Query: 472 RDDVHLLGSADETAYCQQHVVEAAI---SG*FDSPFEVGFFRI-GAFSGSDFDFLTEGTT 305
+DD +LGS + QH+ E+ S + G+ +FSGS+ D++ EG +
Sbjct: 273 QDDASILGSRELLHGSVQHMPESRHRRDESLISSTYSNGYGGDESSFSGSEVDYIDEGGS 332
Query: 304 PSSA 293
PS +
Sbjct: 333 PSDS 336
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -1
Query: 204 YAGGRLCMVVAGTLKRL--SLGGVALPTAYSLPVTIRCAS 91
+AGG + AGTL+RL LGG TA++L T+R +S
Sbjct: 186 HAGG-FVLHPAGTLRRLRHGLGGFTTLTAWALRRTLRASS 224
>12_02_0778 +
23074463-23076411,23076859-23077072,23077824-23077887,
23077930-23078008,23078181-23078303,23078805-23078919
Length = 847
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 421 QHVVEAAISG*FDSPFEVGFFRIGAFSGSDFD 326
+ V+EA ++ +PF+V F IG++SG+ D
Sbjct: 787 RRVIEALLNS-IGAPFQVERFNIGSYSGNGMD 817
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,635,509
Number of Sequences: 37544
Number of extensions: 499987
Number of successful extensions: 1568
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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