Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31421
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    28   1.1  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    27   3.5  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    27   3.5  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   4.6  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   4.6  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   8.0  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 26/103 (25%), Positives = 43/103 (41%)
 Frame = +1

Query: 7   FSNIKIFIFEILYLITKTN*FCNDFTMAKYILLTRMMFHLSNHYQIQFTLTYIETISKWS 186
           FS     I  +L LI   N   + F +A        +F++ N     + L Y+   S   
Sbjct: 293 FSKKSFLIVSVLLLIAHFNTIFHPFILADN---RHYLFYVFNRLFRIWWLKYLGPFSYLI 349

Query: 187 MIPPAILINPLQIVSLERFLINDPEVKHP*PSPVCRH*YILMP 315
           +    + I+ LQ+ SL  FL+    +    P+P+    Y L+P
Sbjct: 350 LYYFFLDISKLQMTSLTFFLLISTTILTLVPAPLVEFRYFLLP 392


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 363 SESILPASFLLSLVTSAPSRLAASRCFSGSLDAVNRKTAGAVI 491
           S S LP+SF +++VT A S   +      ++  V+  T GAVI
Sbjct: 142 STSFLPSSFAMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVI 184


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 355 LLYMDKLKIENGLKALGYTNDDIPDLVKGALPQDRLLKIAPVT 227
           LL +D LKIE    ++G +   +  L  GAL   R+ +IA ++
Sbjct: 203 LLLLDHLKIEKLYASVGSSLGGMQSLTLGALAPHRVGRIASIS 245


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +3

Query: 267 APLTKSGMSSLVYPNAFNPFSIFNLSIYKSMTSESILPASFLLSLVTSAPSRLAASRCFS 446
           APL++     L        F IFN+S+  +   ++I+   F      SAP  + A+  F+
Sbjct: 191 APLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMCRFFSGFFASAPLTVVAA-AFA 249

Query: 447 GSLDAVNRKTAGAVIT 494
              D  + K  G  IT
Sbjct: 250 ---DMYSNKHRGTAIT 262


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 317 QSVFNLQLIHIQEYDVGEYSTGVFSLIV 400
           QSV N Q + I++ +VG++  G  + ++
Sbjct: 474 QSVLNQQFLRIEDIEVGQFVDGTIAKLI 501


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +3

Query: 324 FSIFNLSIYKSMTSESILPASFLLSLVTSAPSRLAASRCFSGSLDAVNRKTAGAVIT 494
           F IFN+S+      ++I+   F      SAP  + A    +   D  + K  G  IT
Sbjct: 211 FGIFNISVAVGKDIQTIMMCRFFAGFFASAPLTVVA----AALADMYSNKYRGTAIT 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,724
Number of Sequences: 5004
Number of extensions: 48702
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)