Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31421
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0968 - 7618357-7618529,7618891-7619094,7620896-7621139,762...    29   3.6  
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283...    28   6.3  
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338...    28   6.3  
03_01_0648 - 4749150-4749275,4749902-4749986,4750761-4750861,475...    28   6.3  
01_05_0268 - 20251413-20251565,20252420-20252674,20252905-202530...    28   6.3  
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504...    28   8.3  
01_03_0233 + 14042548-14044950                                         28   8.3  

>01_01_0968 -
           7618357-7618529,7618891-7619094,7620896-7621139,
           7623008-7623151,7623272-7623487
          Length = 326

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
 Frame = -2

Query: 673 FGDVEARSSMHLAATMAGV---GIGNAGVHLCHGL-----AYPIAGNVKSFVPEDYG 527
           +GD+  R S+  A   A V    +G+ G     G      A   AGNVK FVP +YG
Sbjct: 72  YGDMNDRESLVAAIRQADVVISAVGHRGTVELDGQLKVVEAIKEAGNVKRFVPSEYG 128


>06_03_0052 -
           16027570-16027617,16027789-16027795,16028103-16028341,
           16028432-16028566,16028670-16028888
          Length = 215

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 619 VGIGNAGVHLCHGLAYPIAGNVKSFVPEDYGSNPIIPHGLSVVMTAPAVF 470
           VG  + G  +    A   AGN+K F+P D+G++    H   +V  A A F
Sbjct: 96  VGYHDVGEQMKIIAAIKEAGNIKRFIPSDFGNDADHAH---IVEPAKATF 142


>03_06_0576 +
           34832900-34832911,34833006-34833122,34833752-34833810,
           34833901-34833960,34834197-34834250,34834332-34834380,
           34834493-34834540,34834889-34834954,34835591-34835641,
           34835732-34835851,34835921-34836005,34836428-34836509,
           34836666-34836774,34837005-34837051,34837131-34837188,
           34839114-34839220,34839700-34839765,34839833-34839879,
           34839977-34840042,34840146-34840243,34840344-34840469,
           34840551-34840835,34840920-34840985,34841079-34841228
          Length = 675

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 370 LSDVIL-LYMDKLKIENGLKALGY--TNDDIPDLVKGALPQDRL 248
           ++D+ L LY +      GLKALGY   ND+    V G LP D L
Sbjct: 448 IADMCLELYKEYGTTMAGLKALGYEFDNDEFHANVHGTLPYDNL 491


>03_01_0648 -
           4749150-4749275,4749902-4749986,4750761-4750861,
           4750933-4751191,4751382-4751434,4752828-4752990,
           4753181-4754616
          Length = 740

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 622 GVGIGNAGVHLCHGLAYPIAGNVKSFVPEDYGSNPIIP 509
           G G G  G   C+GL  P   +  +  P  YG +P  P
Sbjct: 39  GGGGGGGGAAQCYGLHGPTRYHAHAGAPARYGGDPCFP 76


>01_05_0268 -
           20251413-20251565,20252420-20252674,20252905-20253055,
           20253161-20253398,20253966-20254067,20254382-20254611,
           20255599-20255724,20256056-20256828
          Length = 675

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +3

Query: 315 FNPFSIFNL-SIYKSMTSESILPASFLLSLVTSA--PSRLAASRCFSGSLDAVNRKTAGA 485
           F+   I N+ S+ +  TSE +  A  L++L +    P R  A+  F+G L  +     G 
Sbjct: 123 FSDTDILNMDSVRRLNTSEIVHGALVLMNLTSEPMLPGRSTATANFTGFLKTMLTDVVGQ 182

Query: 486 VITTDRP*GIIGLE 527
           V++T R    I +E
Sbjct: 183 VLSTRRHYAAIRME 196


>07_03_0167 -
           14649782-14649864,14649954-14650078,14650357-14650400,
           14650873-14651003,14652469-14652559,14653335-14653445,
           14653623-14653774,14653863-14654067,14654436-14654764,
           14654850-14655309
          Length = 576

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 310 LGYTNDDIPDLVKGALPQD 254
           LG+T  D PDLVK  LP D
Sbjct: 408 LGHTPQDHPDLVKSGLPGD 426


>01_03_0233 + 14042548-14044950
          Length = 800

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/85 (27%), Positives = 36/85 (42%)
 Frame = -2

Query: 574 YPIAGNVKSFVPEDYGSNPIIPHGLSVVMTAPAVFRFTASSDPEKHLEAASLLGADVTND 395
           Y  + NV +F  +     P  P+      T P + R   S   +     A   G D    
Sbjct: 453 YEYSMNVLAFGIQSSDITPAFPYVAPFSCTVPDICRIVRSFIEDSVSFMAHGGGGDTYAA 512

Query: 394 KRKDAGRILSDVILLYMDKLKIENG 320
            +K  GRILS+V+   + KL +++G
Sbjct: 513 VKKYLGRILSEVVDASIQKL-VDSG 536


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,654,139
Number of Sequences: 37544
Number of extensions: 297093
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)