Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31419
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1112 + 8808544-8808695,8808818-8808961,8809302-8809380,880... 34 0.088
03_03_0072 + 14266286-14266552,14266860-14266964,14267063-142671... 33 0.15
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042... 33 0.15
09_04_0014 + 13760333-13760590,13760751-13760855,13760934-137609... 33 0.27
07_03_1442 - 26565339-26565578,26566227-26566274,26566352-265664... 31 0.82
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 29 3.3
04_01_0267 + 3584117-3584922,3585331-3585361 29 3.3
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672... 29 4.4
02_05_0978 - 33242938-33242988,33243729-33243911,33244458-332445... 29 4.4
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 28 5.8
>01_01_1112 +
8808544-8808695,8808818-8808961,8809302-8809380,
8809477-8809555,8810338-8810377,8810455-8810589,
8810901-8811038,8811596-8811881
Length = 350
Score = 34.3 bits (75), Expect = 0.088
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -2
Query: 356 CVSPTAQVQTHPRFHKLLVFQSKQARTCVYFLFLVYL--KVSRLPNLRSLDD 207
C SP + + +F + +R C +F FL++L S L NLRSL D
Sbjct: 57 CTSPAKKTELEMLGMDASIFDATSSRCCFFFFFLLFLFFVPSSLTNLRSLQD 108
>03_03_0072 +
14266286-14266552,14266860-14266964,14267063-14267110,
14267851-14268099
Length = 222
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 504 GSILSLMLKEYVRNSMMQALEDSTRAVS-SKDAGRYLCEYIYYTSL 638
GSI +L N + ++L+ V+ S DAGR++C Y+YY SL
Sbjct: 133 GSISNLRKTTVPVNEVNKSLQQMGFDVAPSDDAGRFVCNYVYYQSL 178
>01_05_0127 -
18401461-18401464,18401868-18403876,18404060-18404237,
18404381-18404958,18405609-18405611
Length = 923
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -1
Query: 624 RCTHTNICQHLWSSQPWWSLPGLASLNSLHILSTLSLVWILTAPSAVQT 478
RC H + C L PW SLP + SL ++HI L I P + T
Sbjct: 771 RCIHLHSCPRLRHVLPW-SLPTMESLETIHITYCGELTQIFPKPGSCWT 818
>09_04_0014 +
13760333-13760590,13760751-13760855,13760934-13760981,
13761450-13761503,13761670-13761900
Length = 231
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +3
Query: 507 SILSLMLKEYVRNSMMQALEDSTR-----AVSSKDAGRYLCEYIYYTSL 638
S+ L++KE + L S R + S DAGR++C Y+YY SL
Sbjct: 145 SVYKLIIKETNTTLPVNELTKSLRKTGYDVMPSDDAGRFVCNYVYYHSL 193
>07_03_1442 -
26565339-26565578,26566227-26566274,26566352-26566456,
26566628-26566885
Length = 216
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 588 SKDAGRYLCEYIYYTSL 638
S DAGR++C Y+YY SL
Sbjct: 159 SDDAGRFVCNYVYYHSL 175
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 663 QCTGYYPRTAMCSRCTHTNICQHLWSSQPWWSLPGLAS 550
+C GYY +C C H + Q L + PG AS
Sbjct: 341 ECGGYYDAATVCDHCHHRHQQQLLAVGYSYSHAPGAAS 378
>04_01_0267 + 3584117-3584922,3585331-3585361
Length = 278
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 523 IKLSMDPDCSVCCTDMIS 470
I+LS+ P C++CCT +S
Sbjct: 254 IELSLSPSCTICCTPRLS 271
>03_02_0803 +
11365959-11366390,11366470-11366502,11367158-11367214,
11367784-11367945,11367987-11368139,11368218-11368295,
11368377-11368469,11368981-11369071,11369091-11369209
Length = 405
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 565 KTPPGL*APKMLADICVSTSTTHRC 639
+ PPG AP ++ D+C S HRC
Sbjct: 20 RPPPG--APPLIEDVCFSLDAGHRC 42
>02_05_0978 -
33242938-33242988,33243729-33243911,33244458-33244520,
33244656-33246083
Length = 574
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 535 YSFNIKLSMDPDCSVCCTDMISRTFVKIIQTLIAFLM 425
Y FN+KL +DPD C + + + V + Q +I L+
Sbjct: 307 YFFNLKLQIDPDAFACAIEKLPQ-LVSLHQNIILKLV 342
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 239 KLLDKQEIENKHRCELVLIEIPVTYEN-VDEFVPAL-WETHTPKLMIHVGVSSIANELTL 412
K++ K++ ++KH +L + ++P YE+ V VP+ THT IH ++ ++
Sbjct: 713 KMVLKEKSQDKHVIDLNIPQVPSDYESAVSYIVPSSDKNTHTMDRSIHSSETNRMDDCLP 772
Query: 413 EVQAHKKG 436
++ A G
Sbjct: 773 DINASCNG 780
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,790,625
Number of Sequences: 37544
Number of extensions: 335595
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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