Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31418
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    25   5.2  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   6.9  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    24   9.1  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    24   9.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    24   9.1  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    24   9.1  

>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 113 HYFFVCCLNGWTSSQ 157
           H F   C+NGWTS +
Sbjct: 273 HIFCWSCINGWTSKK 287


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 141 GGRAHNPPGVKWLLEP 188
           GG  H+P  V WLL P
Sbjct: 235 GGPLHDPNTVMWLLRP 250


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 325 VPTRVDSQKVLPPVNDYC 378
           +  R+ S  +LPP+ND+C
Sbjct: 88  IAKRIFSLVLLPPLNDWC 105


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 147 RAHNPPGVKWLLEPIYIYNVNAPPTLRYKF*GLKYSYNMLP 269
           R  N  G + L  P+ +++   PPT       L   YN  P
Sbjct: 225 RFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMYNHFP 265


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 34  TSCVSPHNCC*MFLTK*QVCQFAK*NSLFFCLLLKRVDELTTHLVLSGYWSPYTSI 201
           T  + P  C   + T   +C+  +  S F    LKR  E+ +H   S +W+ ++S+
Sbjct: 404 TLFILPETCNHAYNT--MLCKLTEDTSSF----LKRQTEMLSHSPASSHWASFSSL 453


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 333 GRYHHLAYFCCEAVMHFGVKGGAACCN 253
           G Y    Y  CE +++   + G AC N
Sbjct: 90  GNYKFKTYSDCEVILYLYREHGPACAN 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,944
Number of Sequences: 5004
Number of extensions: 35647
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)