Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31418
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0118 - 15451031-15451123,15451744-15451831,15451914-154519...    29   1.6  
10_08_0772 + 20471748-20473004                                         27   6.5  
03_01_0486 - 3699290-3699296,3699485-3699745,3699889-3700046,370...    26   8.6  
01_06_1309 - 36170947-36171077,36171227-36172198,36172285-361724...    26   8.6  

>02_03_0118 -
           15451031-15451123,15451744-15451831,15451914-15451985,
           15452896-15453018,15453541-15453629
          Length = 154

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 74  LQSNKYVNLQNKIHYFFVCCLNGWTSSQPTWC*VVTGAHIHL 199
           L+   YV L  K+HY ++  L+ +T S   WC    G H+ L
Sbjct: 78  LKIQNYVKLTYKLHYSYIEKLSMYTWSHLFWC---LGPHLSL 116


>10_08_0772 + 20471748-20473004
          Length = 418

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 210 APPTLRYKF*GLKYSYNMLPHPSHRNA-LLLHSRNRQGGG 326
           AP +L  +    K+SY + PH S +N+ LLL S  +  GG
Sbjct: 197 APSSLVSQMNITKFSYCLTPHDSGKNSRLLLGSSAKLAGG 236


>03_01_0486 -
           3699290-3699296,3699485-3699745,3699889-3700046,
           3700265-3700469,3701285-3701574,3701648-3701810,
           3701897-3701985,3702086-3702153,3702560-3702722
          Length = 467

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 152 SSSTRLSNKQKNSEFYFAN*HTC 84
           S   +L NK K  ++++AN H C
Sbjct: 427 SCRQKLENKPKEEDYFYANPHEC 449


>01_06_1309 -
           36170947-36171077,36171227-36172198,36172285-36172413,
           36172535-36172779,36172904-36173055,36173202-36173306
          Length = 577

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 277 HTEMHYCFTAEIGKVVVPTRVDSQKVLPPVND 372
           H E+H  +  ++  VV    + +QK+LPP +D
Sbjct: 542 HLEVHVSWGLKMAWVVQDGSLPNQKILPPPSD 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,150,150
Number of Sequences: 37544
Number of extensions: 253464
Number of successful extensions: 443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)