Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31409
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   341   5e-95
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    81   2e-16
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    54   2e-08
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    31   0.092
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   4.6  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   4.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   6.1  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   8.0  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   8.0  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  341 bits (838), Expect = 5e-95
 Identities = 160/191 (83%), Positives = 179/191 (93%)
 Frame = +2

Query: 2   FNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPY 181
           +N   DE KKLYC+YVA+GQKRSTVAQ+V++L +  ++ Y+IIV+ATAS++APLQYLAP+
Sbjct: 217 WNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEENDSLKYSIIVAATASESAPLQYLAPF 276

Query: 182 SGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 361
           SGCAMGE+FRDNGKH L++YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER
Sbjct: 277 SGCAMGEWFRDNGKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 336

Query: 362 AAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 541
           AAKMS K GGGSLTALPVIETQ GDVSAYIPTNVISITDGQIFLE+ELF+KGIRPAINVG
Sbjct: 337 AAKMSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVG 396

Query: 542 LSVSRVGSAAQ 574
           LSVSRVGSAAQ
Sbjct: 397 LSVSRVGSAAQ 407


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 1/178 (0%)
 Frame = +2

Query: 41  IYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DN 217
           ++ A+G    T     +   + G+     +    A+D    + + P    +  EF     
Sbjct: 208 VFAAMGVNLETARFFQRDFEENGSFERVTLFLNLANDPTIERIITPRLALSASEFLAYQT 267

Query: 218 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGS 397
            KH L I  D++  A A R++S      PGR  YPG ++   S + ERA ++  +   GS
Sbjct: 268 EKHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGR--NGS 325

Query: 398 LTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 571
           +T +P++     D++  IP     IT+GQIF++ +L    I P INV  S+SR+  +A
Sbjct: 326 ITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSA 383


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
 Frame = +2

Query: 122 TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 301
           T +V+ T++     +  + Y+G  + E++RD GK+  ++ D  S+ A A R++S  L   
Sbjct: 317 TTLVANTSNMPVAAREASIYTGITLAEYYRDQGKNVSMMADSTSRWAEALREISGRLAEM 376

Query: 302 PGREAYPGDVFYLHSRLLERAAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISI 472
           P    YP  +    +   ERA +   +      G+++ +  +    GD S  + +  + I
Sbjct: 377 PADSGYPAYLGAKLASFYERAGRARCLGSPDREGTVSIVGAVSPPGGDFSDPVTSATLGI 436

Query: 473 TDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQ 574
                 L+ +L  +   P+IN  LS S+  +A Q
Sbjct: 437 VQVFWGLDKKLAQRKHFPSINTSLSYSKYINALQ 470


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 31.5 bits (68), Expect = 0.092
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 257 QAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM 373
           Q++A  +  +LL+ P GRE   GD FY +   +   A++
Sbjct: 651 QSLACAKYKILLKDPKGREVNAGDKFYFNENFVSNLARI 689


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 248 LSKQAVAYRQMSLLLRRPP 304
           LSK+A+ YR+  L L+RPP
Sbjct: 102 LSKRALHYRRKRLALKRPP 120


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 229 GVFAIITEKFTHGTTR-VRSQVLQGSSIGSGGRHDDCVVDGTSISQSLHNLSYS 71
           G+  ++ E F H   R + S  L G      G+  +CV+   S S S  N++YS
Sbjct: 152 GIAKLLRESFIHAPGRDLDSNFLLGIYNLFLGQAQECVLGHMSFSASDSNMNYS 205


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 208 EKFTHGTTRVRSQVLQGSSIGSGGRHDDCVVDGTS 104
           +KFT     V S  + GS I S    DD + DG+S
Sbjct: 80  DKFTFSDAAVNSAGMGGSGIFSHNNADDGLGDGSS 114


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 197 GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPG 325
           GE +   G H  ++ DDLS+   AYRQ    L+ P   + + G
Sbjct: 402 GEIWSALG-HCYLMQDDLSRAYSAYRQALYHLKDPKDPKLWYG 443


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 470 ITDGQIFLETELFYKG 517
           +TDG ++ +TE F KG
Sbjct: 270 VTDGSVYFDTEAFEKG 285


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 148 GSGGRHD-DCVVDGTSISQSLHNLSYSRPLL 59
           G+  RH  D +V+G  I++   N S + PL+
Sbjct: 276 GTRRRHQVDTIVEGVGINRMTRNFSIAEPLI 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,966
Number of Sequences: 5004
Number of extensions: 49270
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)