Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31409
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 84 9e-17
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 83 2e-16
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 55 5e-08
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 53 2e-07
12_01_0994 - 10077322-10077696,10078303-10078839,10079062-10079112 30 1.2
09_04_0131 + 14917239-14918510,14918803-14918895 29 2.0
01_05_0397 + 21753095-21753814 29 2.7
11_06_0679 - 26227654-26227770,26234067-26236217 29 3.5
09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173 29 3.5
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797... 28 4.7
12_02_0249 + 16427590-16428975,16428990-16429082 28 6.2
06_01_1136 + 9407282-9407663,9408075-9408227,9408336-9408539,940... 28 6.2
05_06_0097 + 25548272-25548664 28 6.2
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688... 27 8.2
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 83.8 bits (198), Expect = 9e-17
Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 2/189 (1%)
Frame = +2
Query: 11 GEDEKKKLYCIYVAIGQKRSTVAQIVKR-LTDAGAINYTIIVSATASDAAPLQYLAPYSG 187
GED+ + ++ A+G T AQ KR + G++ + A+D + + P
Sbjct: 239 GEDDNFAI--VFAAMGVNMET-AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 295
Query: 188 CAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERA 364
E+ + GKH L+I D+S A A R++S PGR YPG ++ + + ERA
Sbjct: 296 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERA 355
Query: 365 AKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGL 544
++ + GS+T +P++ D++ P IT+GQI+++ +L + I P INV
Sbjct: 356 GRIEGR--SGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLP 413
Query: 545 SVSRVGSAA 571
S+SR+ +A
Sbjct: 414 SLSRLMKSA 422
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 82.6 bits (195), Expect = 2e-16
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 2/186 (1%)
Frame = +2
Query: 20 EKKKLYCIYVAIGQKRSTVAQIVKR-LTDAGAINYTIIVSATASDAAPLQYLAPYSGCAM 196
E + ++ A+G T AQ KR + G++ + A+D + + P
Sbjct: 210 EDENFAIVFAAMGVNMET-AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 268
Query: 197 GEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM 373
E+ + GKH L+I D+S A A R++S PGR YPG ++ + + ERA ++
Sbjct: 269 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRI 328
Query: 374 SDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVS 553
+ GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+S
Sbjct: 329 EGRK--GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLS 386
Query: 554 RVGSAA 571
R+ +A
Sbjct: 387 RLMKSA 392
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 54.8 bits (126), Expect = 5e-08
Identities = 45/192 (23%), Positives = 89/192 (46%), Gaps = 13/192 (6%)
Frame = +2
Query: 41 IYVAIGQKRSTVAQIVK---RLT-------DAGAINYTIIVSATASDAAPLQYLAPYSGC 190
+YV G++ + +A+++ +LT + + T +V+ T++ + + Y+G
Sbjct: 292 VYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI 351
Query: 191 AMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK 370
+ E+FRD G + ++ D S+ A A R++S L P YP + + ERA K
Sbjct: 352 TIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGK 411
Query: 371 ---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 541
+ GS+T + + GD S + + +SI L+ +L + P++N
Sbjct: 412 VKCLGSPDRTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWL 471
Query: 542 LSVSRVGSAAQT 577
+S S+ A ++
Sbjct: 472 ISYSKYSKALES 483
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 52.8 bits (121), Expect = 2e-07
Identities = 43/185 (23%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Frame = +2
Query: 41 IYVAIGQKRSTVAQIVK---RLT-------DAGAINYTIIVSATASDAAPLQYLAPYSGC 190
+YV G++ + +A+++ +LT + + T +V+ T++ + + Y+G
Sbjct: 278 VYVGCGERGNEMAEVLMDFPQLTMTTEDGREESVMKRTTLVANTSNMPVAAREASIYTGI 337
Query: 191 AMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK 370
+ E++RD G + ++ D S+ A A R++S L P YP + + ERA K
Sbjct: 338 TIAEYYRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGK 397
Query: 371 ---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 541
+ GS+T + + GD S + + +SI L+ +L + P++N
Sbjct: 398 VRCLGSPKRDGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWL 457
Query: 542 LSVSR 556
+S S+
Sbjct: 458 ISYSK 462
>12_01_0994 - 10077322-10077696,10078303-10078839,10079062-10079112
Length = 320
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 465 SPSLMDRSSWKLSCSTKVSDQPSTSVCLYRVSDLLL 572
S +L + W L C + SD PS RV+DL++
Sbjct: 44 SLALEQSNGWSLHCGERASDSPSPRALPLRVADLIV 79
>09_04_0131 + 14917239-14918510,14918803-14918895
Length = 454
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 170 LAPYSGCAMGEFFRDNGKHALIIYDDLSK 256
L Y+ F RDN KHAL+ Y DL K
Sbjct: 75 LYTYNALMSSHFKRDNIKHALVFYYDLLK 103
>01_05_0397 + 21753095-21753814
Length = 239
Score = 29.1 bits (62), Expect = 2.7
Identities = 29/91 (31%), Positives = 40/91 (43%)
Frame = +2
Query: 38 CIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN 217
C V I K +T A V +D ++ V+A D P+ A + AM +F D+
Sbjct: 84 CSTVVI-TKAATAAHSVFTFSDQSSMP----VAAAQDDGRPVG--AYWCSAAMSAYF-DD 135
Query: 218 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 310
KH YD ++KQ V LR PP R
Sbjct: 136 KKH----YDQVTKQVVVAAADRCFLRTPPRR 162
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 178 RSQVLQGSSIGSGGRHDDCVVDGTSISQS 92
R Q L ++G+GG D C + G QS
Sbjct: 63 RLQTLHNQTVGAGGSSDQCAIPGAREKQS 91
>09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173
Length = 377
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 14 EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINY 121
EDE + + +Y+AIG + +T+A + TD NY
Sbjct: 73 EDEDRLICSLYIAIGSRWATIAAQLPGRTDNDIKNY 108
>03_06_0128 -
31879286-31879381,31879463-31879574,31879680-31879747,
31880959-31881072,31881207-31881247,31881340-31881393,
31881785-31881866,31882063-31882116
Length = 206
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 508 LQRYPTSHQRRSVCIACRIC 567
L+RYPT +R CIAC++C
Sbjct: 97 LRRYPTGEER---CIACKLC 113
>12_02_0249 + 16427590-16428975,16428990-16429082
Length = 492
Score = 27.9 bits (59), Expect = 6.2
Identities = 22/95 (23%), Positives = 42/95 (44%)
Frame = +2
Query: 272 RQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYI 451
R+MS + PP + + P Y ++ + + D GG+ A ++ ++ A
Sbjct: 269 RRMSRVSFDPPYQHSPPPSYTYF-VLAVDVSIRRRDGETGGTTAAATIMPLPTTELRAPS 327
Query: 452 PTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 556
T ++T GQ+ L + G R + ++ L V R
Sbjct: 328 CTGEATVTPGQLLLAPSSWRGGDRRSSSLALLVGR 362
>06_01_1136 +
9407282-9407663,9408075-9408227,9408336-9408539,
9408709-9409174,9409434-9409575
Length = 448
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 224 VCHYHGKIHPWHNQSKEP 171
VCHY+ +HP HN+ K+P
Sbjct: 242 VCHYN--VHPIHNELKDP 257
>05_06_0097 + 25548272-25548664
Length = 130
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 365 RHAQADGSEDRTRHQDKPHGRGDDA 291
+H + D R RHQ++ HG DDA
Sbjct: 16 QHLRRDDDARRRRHQEQQHGGVDDA 40
>11_06_0014 -
19267601-19267831,19268338-19268454,19268733-19268890,
19269501-19269612,19269721-19269908,19270344-19270436,
19270521-19270708,19271635-19271720,19272662-19272811,
19273930-19274065,19274143-19274222,19275546-19275626,
19276114-19276245,19276490-19276610,19277457-19277518,
19277846-19277974,19278514-19278573,19278689-19278772,
19278852-19279532
Length = 962
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 281 SLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSLT 403
SLL PPG P D+ + +++L R + GG T
Sbjct: 54 SLLAAPPPGHPPPPADLLFFAAQMLRRKIQCPPAAAGGCPT 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,186,225
Number of Sequences: 37544
Number of extensions: 384297
Number of successful extensions: 1137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -