Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31409
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/32 (21%), Positives = 15/32 (46%)
 Frame = -2

Query: 404 QSGSHHPFCQTS*RHAQADGSEDRTRHQDKPH 309
           Q  +H+       RH+    +++  +H D+ H
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQHNDQAH 451


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 37  LHLCCHWTEEVYCSSNCEE 93
           LH   H+ E+VY  + C E
Sbjct: 249 LHQVAHYGEKVYKCTLCHE 267


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 271  PSDVSTAASSPRP*GLSW 324
            P+D+    SSP+   +SW
Sbjct: 1217 PADIKVVVSSPQALFISW 1234


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 271  PSDVSTAASSPRP*GLSW 324
            P+D+    SSP+   +SW
Sbjct: 1213 PADIKVVVSSPQALFISW 1230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,880
Number of Sequences: 438
Number of extensions: 3791
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)