Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31405
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 27 1.3
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 26 2.3
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 2.3
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 3.0
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 25 4.0
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 24 7.0
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 24 7.0
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 24 9.3
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 24 9.3
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc... 24 9.3
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 26.6 bits (56), Expect = 1.3
Identities = 14/69 (20%), Positives = 30/69 (43%)
Frame = +3
Query: 63 CETKFNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKPEYSTAK 242
C + R+ + +I+ + + H G +S ++++ +S D EY
Sbjct: 584 CSSPDERIRIPQRIIRHILNRHLGNNVGDRVSFRNEKFRVYVHSKISPNTDTYNEYVPVM 643
Query: 243 EAFEKCLKS 269
EA+ + +KS
Sbjct: 644 EAYNEAVKS 652
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 2.3
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 75 FNRMSVITKI-VPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQPL 212
FN + +I+ + V S+ G+ ++K S+F YT L +PL
Sbjct: 357 FNAVIIISVVSVTNSSTYTAGRTLHGMANLKQAPSFFKYTDRLGRPL 403
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 123 LHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKP 224
LH GKLS ++ D Y + S PL +P
Sbjct: 683 LHLGKLSENYIHYYVDSMYALFIYSTDIPLKAEP 716
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.4 bits (53), Expect = 3.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 79 LNLVSHKAKGCRYYYFI 29
LNL S+K GCR +Y I
Sbjct: 384 LNLASNKITGCRTFYHI 400
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 25.0 bits (52), Expect = 4.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 75 FNRMSVITKI-VPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQPL 212
FN + +I+ I V S+ G+ ++K ++F YT L +PL
Sbjct: 357 FNAVIIISVISVTNSSTYTAGRTLHGMANLKQAPAFFKYTDRLGRPL 403
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 24.2 bits (50), Expect = 7.0
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 45 RHPFALCETK-FNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQS-LSQPLDR 218
R+P + ++ R++ +++ P + +++ L +++ D T + S+P R
Sbjct: 48 RYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQR 107
Query: 219 KPEYSTAKEAFEKCLKSGK 275
T K FE+ ++GK
Sbjct: 108 SAAKKTVKNTFEEKYQTGK 126
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 24.2 bits (50), Expect = 7.0
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 45 RHPFALCETK-FNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYT-QSLSQPLDR 218
R+P + ++ R++ +++ P + +++ L +++ D T + +P R
Sbjct: 48 RYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQR 107
Query: 219 KPEYSTAKEAFEKCLKSGK 275
T K+ FE+ +SGK
Sbjct: 108 SAARKTVKKTFEEKYQSGK 126
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 23.8 bits (49), Expect = 9.3
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +3
Query: 138 LSSAFLSVKSDRSYFTYTQSLSQPLDRKPEYSTAKEAFEKCLKSGKFCQK 287
L S S DR+ + + + PE + F L GK+C+K
Sbjct: 859 LESLLQSGSQDRAIYDALAKIYIDSNNNPEVFLKENNFYDTLTVGKYCEK 908
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 23.8 bits (49), Expect = 9.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 222 PEYSTAKEAFEKC 260
P+Y+T+KE FE C
Sbjct: 509 PKYNTSKEHFEAC 521
>SPAC24B11.08c |||COPII-coated vesicle component
Erv46|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 168 DRSYFTYTQSLSQPLDRKPEYSTAKEAFEKCLKSGKFCQKHFIK 299
D S+ + S PLD YS + K + + + ++FIK
Sbjct: 241 DMSHSIHHLSFGPPLDASVHYSNPLDGTVKKVSTADYRYEYFIK 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,115
Number of Sequences: 5004
Number of extensions: 27025
Number of successful extensions: 70
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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