Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31405
(380 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392 27 3.8
09_01_0158 + 2332381-2333211 27 5.0
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 27 5.0
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802... 27 6.6
10_01_0298 - 3094197-3094307,3095093-3095253,3095462-3095666,309... 27 6.6
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389... 27 6.6
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 26 8.7
10_08_0890 + 21339976-21340198,21340293-21340402,21340652-213408... 26 8.7
05_06_0204 + 26354319-26356967 26 8.7
>10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392
Length = 271
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 240 LRSNIQASCPGAATTIVYT*SNFYPI 163
+R N SC G T++ T N+YP+
Sbjct: 97 IRCNKDPSCSGNIETVIITDMNYYPV 122
>09_01_0158 + 2332381-2333211
Length = 276
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -2
Query: 280 QNLPDLRHFSNASFAVEYSGFLSR----GCDNDCVY 185
Q+L LR++S ASF+ GF+S C+N VY
Sbjct: 43 QSLSGLRNWSKASFSAPCEGFISHLQGVTCNNGRVY 78
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 187 IHNRCRSP---WTGSLNIRPQRRRLRNVLNPVSFAKNILLKNN*VPFDT 324
IH+ SP W G + R R NV++PVS +L + + P DT
Sbjct: 377 IHSNASSPPIAWVGQRPQKMSRTRRANVVSPVSNFDEVLSEGS--PLDT 423
>11_02_0073 -
8020401-8020512,8020594-8020679,8020761-8020921,
8021196-8021400,8021664-8021697,8022352-8022422,
8023363-8023542,8023625-8023765,8023859-8023975,
8024074-8024469
Length = 500
Score = 26.6 bits (56), Expect = 6.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = +3
Query: 123 LHFGKLSSAFLSVKSDRSYFTYTQ----SLSQPL-DRKPEYS 233
+HF + SSA +VK Y Q S+++PL D+KP++S
Sbjct: 360 VHFAERSSALKAVKGSEKYEFNGQVLEVSMAKPLGDKKPDHS 401
>10_01_0298 -
3094197-3094307,3095093-3095253,3095462-3095666,
3096349-3096534,3096616-3096756,3096843-3096959,
3097046-3097456
Length = 443
Score = 26.6 bits (56), Expect = 6.6
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = +3
Query: 123 LHFGKLSSAFLSVKSDRSYFTYTQ----SLSQPL-DRKPEYS 233
+HF + SSA +VK Y Q S+++PL D+KP++S
Sbjct: 332 VHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKKPDHS 373
>06_03_0157 +
17337641-17337896,17337975-17338082,17338643-17338908,
17339933-17340021,17340095-17340198,17340403-17340508,
17340600-17340675,17340772-17340883,17341719-17342250,
17343097-17343131,17343924-17343984,17344054-17344132,
17344266-17344349
Length = 635
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 99 KIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQ 206
+I+P + L FG + SAF + +D F Y QSL +
Sbjct: 245 RIIP--NRLTFGSVRSAFDDIDADDPDFLYIQSLGE 278
>11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 150 FLSVKSDRSYFTYTQSLSQPLDRKPEYSTAKEAFEKCL 263
FLS+KS++ + L + LDRK E +E CL
Sbjct: 964 FLSMKSNQRSESLNSKLHRLLDRKMSLVILVEHYEHCL 1001
>10_08_0890 +
21339976-21340198,21340293-21340402,21340652-21340836,
21341415-21341757
Length = 286
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 240 LRSNIQASCPGAATTIVYT*SNFYPI 163
+R SC G + T++ T N+YP+
Sbjct: 112 IRCTKDQSCSGRSETVIITDMNYYPV 137
>05_06_0204 + 26354319-26356967
Length = 882
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 274 LPDLRHFSNASFAVEYSGFLSRGCDNDCVYVK*LL--SDLTLRKAEL 140
+P +R + +++ SG+ S GC + V + +L S L LR+ +L
Sbjct: 331 VPAVRRHDASLYSLAISGYHSNGCQGEAVKLAEVLLYSGLNLREGDL 377
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,533,379
Number of Sequences: 37544
Number of extensions: 143117
Number of successful extensions: 320
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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