Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31404
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 29 0.27
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 27 1.4
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 3.3
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 26 3.3
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 25 4.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 7.7
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 25 7.7
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.7
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb... 25 7.7
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 7.7
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 7.7
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 29.5 bits (63), Expect = 0.27
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Frame = +3
Query: 87 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 239
Y VG+ N + ++++ WGHS+ +V E+L +QD E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -2
Query: 463 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPA 329
FPVL QI+P P L + R F+ S+ SP++ + R LP+
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPS 482
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 132 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 239
NW + ++G I SSQ E +L KV SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 431 STPGGALPSIPLSFSFATILPPESKIFGFPEAA 333
ST ALP PLSFS P ++ PE+A
Sbjct: 420 STMPEALPREPLSFSLPEKAPEKATNISIPESA 452
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 4.4
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Frame = +2
Query: 206 FAKGVFINQERKLEVRRRLDTA----LVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTPGG 373
F G+F+ + K +R + A L NM G P WT G
Sbjct: 258 FNAGLFVFKPLKAHYKRLMALARFPKLYDNANMMEQSLLNFAYNSAGAFPWESLDWTFNG 317
Query: 374 VWLQS*NLKELTEGHHQEW 430
+W + +L L H + W
Sbjct: 318 LWARKNDLPYLKAVHGKHW 336
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 275 VLTVNMSSSDPPTLLQWLGGQLPGNQRF 358
V+++ ++ P +LQW GG+ G+ F
Sbjct: 706 VISIAKANPTFPIVLQWTGGRAGGHHSF 733
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 95 NKIEPRSYSIIPCTKYSSSIFSP 27
N ++P+S +++P T + SI SP
Sbjct: 29 NPVKPQSSNVVPGTSHIGSIKSP 51
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 7.7
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 460 PVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPAEPL 320
PV S Q+ P + V + Q Y P SP V +PA P+
Sbjct: 374 PVQSYQSGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPM 420
>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 7.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 311 TLLQWLGGQLPGNQRFWTPGGVWLQS*NL 397
TLLQ LG +P G VW+ S NL
Sbjct: 180 TLLQTLGSYIPFEIAVGMNGRVWVNSENL 208
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 71 NMISVLFCWFSELRGND 121
N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 24.6 bits (51), Expect = 7.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 271 PSSNRKYVI*RSADVTTMARRAASGKPKILDSGGSMVAKLKLKGIDGRA 417
P++NR + S +VT +++ PKIL + + + K K I G A
Sbjct: 749 PTANRIACLTESGEVTVYSKKGPVWSPKILSQNKNYLTETK-KDIYGIA 796
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,221
Number of Sequences: 5004
Number of extensions: 37803
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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