Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31404
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   0.55 
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   6.8  
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 417 CPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 313
           CP  ++F F  C     G++  +FPG+CP   CS+
Sbjct: 203 CPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 172 LDRRKTNISESICQRCFHQSRTKVRGS 252
           L+     +S  ICQ CFHQ   K++G+
Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 464 ISRVESN*AAGSTPGG-ALPSIPLSFSFATILPPESKIFGFPEAARRAI 321
           + R  S  +  +TP G A P  PLS S +    P+S   G P + +R++
Sbjct: 526 VVRTTSTSSVPTTPTGLAAPKTPLSASVSATNEPDSTTNGTPLSRKRSM 574


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,845,502
Number of Sequences: 27780
Number of extensions: 219191
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)