Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31402
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.1  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   4.1  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.4  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 354 FWARMQKKYPLLPMKEINVACRKVFTD 434
           FW R      LLP++ I  AC  +  D
Sbjct: 226 FWERTYMFLELLPLQSITAACESILKD 252


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 228 NIYMSVGLPTPFAGALMM 281
           +IY SV +PTP  G+L++
Sbjct: 293 DIYASVSIPTPLGGSLLL 310


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 444 YHMYLQSHYTIDRAQGNSVRSLC 512
           YH    SH+ I R   N +R LC
Sbjct: 545 YHQSFSSHWFISRLLINPIRMLC 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,591
Number of Sequences: 5004
Number of extensions: 55473
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)