Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31402
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0122 + 13675099-13675803                                         29   4.2  
02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226     27   9.7  

>07_03_0122 + 13675099-13675803
          Length = 234

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 359 GPHAKEIPTFAYEGNQCGLP*GF 427
           GPH  E+P F  EG + GL  G+
Sbjct: 111 GPHGMEVPVFDAEGRRYGLTCGY 133


>02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226
          Length = 568

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -3

Query: 248 SNTHINISLSIKYMYFLHGYQVSSQSVPIDIYNVKAPPTLRYKX*GLTIVTTAAPPFIPK 69
           S   INI+  +   +FL G +V      ++ +  +AP T++     L ++T A   ++  
Sbjct: 449 SGEAINIAWQMPQYFFLAGAEVFCYIAQLEFFFGEAPDTMKSTCTSLALLTIALGSYLSS 508

Query: 68  RITA 57
            I A
Sbjct: 509 LIYA 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,124,944
Number of Sequences: 37544
Number of extensions: 379739
Number of successful extensions: 690
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)