Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31401
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0073 + 8861568-8861706,8861809-8862560                           28   4.1  
10_08_0962 + 21880919-21880983,21881100-21881487,21881807-218819...    28   5.4  
03_05_0013 - 19718178-19718930,19718997-19719205,19719245-197193...    27   9.5  

>10_05_0073 + 8861568-8861706,8861809-8862560
          Length = 296

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 119 GVILAEPHLVFGGRR 163
           GV+ A PH++FGGRR
Sbjct: 24  GVVKARPHVLFGGRR 38


>10_08_0962 +
           21880919-21880983,21881100-21881487,21881807-21881931,
           21882374-21882374,21882891-21883115,21888956-21889083,
           21889176-21889227,21890205-21890351,21890444-21890566,
           21890648-21890722,21890812-21890931,21892546-21892632,
           21893115-21893183,21893262-21893353,21893465-21893584,
           21893725-21893767,21893848-21893910,21894091-21894162,
           21894247-21894291,21894354-21894424,21894508-21894573,
           21894715-21894799
          Length = 753

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 528 KRHLYFSYKYLPLAGFEPATPLCSDHVSYHYIRRPFIIIATEF 400
           + +LY +     + G EP TPL +  V+      P ++I ++F
Sbjct: 418 QEYLYTNLIMSNVLGDEPGTPLAASQVARSICNHPVMVIGSDF 460


>03_05_0013 -
           19718178-19718930,19718997-19719205,19719245-19719325,
           19719581-19720613
          Length = 691

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 254 KAVPATRR-RVDELTDSTLENLLTSILARAVLRRIYR 361
           + VPAT   R+ E TDS++EN++ +I  R    R+ R
Sbjct: 343 RGVPATETGRIPEQTDSSIENVM-AITTRGGTNRVAR 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,483,017
Number of Sequences: 37544
Number of extensions: 329609
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)