Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31400
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025452-7|AAB70941.2|  335|Caenorhabditis elegans Serpentine re...    29   2.2  
U41108-3|AAK39157.2|  443|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF025452-8|AAB70940.1|  324|Caenorhabditis elegans Serpentine re...    28   6.8  
AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine re...    27   9.0  
AF025452-5|AAK71872.1|  336|Caenorhabditis elegans Serpentine re...    27   9.0  

>AF025452-7|AAB70941.2|  335|Caenorhabditis elegans Serpentine
           receptor, class i protein28 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 299 YLIMESDGKRSLFFFFFIAYMCGRAHSPLGVKCLLEPIDIYNV 171
           YLI+   GK   F F+ +A+      S + +  L++P+ ++ +
Sbjct: 35  YLILFHSGKLDSFRFYLLAFQIACTSSDVNIAFLIQPVGLFPI 77


>U41108-3|AAK39157.2|  443|Caenorhabditis elegans Hypothetical
           protein C08D8.1 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 502 SACNTYRLSLLWSLSGDVWAAXTHPG*LNQAAHNLLGV*DSGNVKGNKYI 651
           +AC  +  SLLW+   D  A  + P  L++ + NL G+  +  + G  Y+
Sbjct: 107 AACAGFSGSLLWTGQFDYLAQNSQPHTLDRNSSNLWGLSQTSLIFGGAYL 156


>AF025452-8|AAB70940.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein31 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 299 YLIMESDGKRSLFFFFFIAYMCGRAHSPLGVKCLLEPIDIYNVNA 165
           YLI+   GK   F F+ +A+      S + +  L +PI ++ + A
Sbjct: 33  YLILFHSGKLDNFRFYLLAFQIWCTASDVNIAFLFQPIFLFQILA 77


>AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine
           receptor, class i protein30 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 299 YLIMESDGKRSLFFFFFIAYMCGRAHSPLGVKCLLEPIDIYNVNA 165
           YLI+   GK   F F+ +A+      S + +  L +PI ++ V A
Sbjct: 33  YLILFHSGKLDGFRFYLLAFQIWCTASDVNIAFLTQPIPLFPVFA 77


>AF025452-5|AAK71872.1|  336|Caenorhabditis elegans Serpentine
           receptor, class i protein29 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 299 YLIMESDGKRSLFFFFFIAYMCGRAHSPLGVKCLLEPIDIY 177
           YL++   GK   F F+ +A+      S + +  L +PI ++
Sbjct: 35  YLLLFQSGKLDNFRFYLLAFQVSCTASDVNIAFLFQPIPLF 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,404,482
Number of Sequences: 27780
Number of extensions: 269592
Number of successful extensions: 462
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)