Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31399
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.95 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   3.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.1  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   6.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 218 VKITHCSPDLPSYARMEPSRHPVIRLFFTQNILVTPLTSFSGFVH 352
           V ++ CSP      +  P +HPVI L   Q++  + L +   F++
Sbjct: 48  VVLSACSPYFRELLKSTPCKHPVIVL---QDVAFSDLHALVEFIY 89


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 240 GEQCVILTGHRSEILDLCYNAKENLILST 154
           G +C   T  ++ I+D+ YNA  N ++ T
Sbjct: 68  GSEC---TTRKTRIIDVVYNASNNELVRT 93


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 501 NGKIVGELQTEND 463
           NGKI+ ELQT+ D
Sbjct: 105 NGKILRELQTDYD 117


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 28  VIHKIFYNKNNLEQPN 75
           +IH++ Y +N  EQP+
Sbjct: 338 LIHRLVYFQNEYEQPS 353


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 365 C*GINVQNQKMKSTELLKCFG 303
           C  I+  +  +KS +LLKC G
Sbjct: 104 CSAISDADLAVKSAKLLKCIG 124


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 194 SRISDLCPVKITHCSPDL 247
           S +  + PVK   CSPDL
Sbjct: 23  STVEPVDPVKSLVCSPDL 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,234
Number of Sequences: 438
Number of extensions: 3542
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)