Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31397
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   1.6  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   2.9  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   5.0  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    24   8.8  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 338 SLSHMRLFPVIEKKLCMYVCIKMYFIDIGEIM 433
           S++ +RL  V+  KLC+ +  +  FIDI  IM
Sbjct: 892 SMNCLRLADVVFMKLCVNIWERFDFIDIEHIM 923


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 9   CQSGLSFNSSVINLCNEHFLLLTYVP 86
           C SG+ F +  ++ C   FLL +++P
Sbjct: 396 CMSGMEFENRPLDFCLRLFLLKSHLP 421


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 179  KRKKSCPESSKYQIR*LTTYTWLHNNCLIEINSK 280
            +R +S P  S++     ++ +WL+  C+I IN++
Sbjct: 952  ERIESYPSDSRFHFN-SSSKSWLYRGCVITINAE 984


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 6   QCQSGLSFNSSVINLCNEHF 65
           QC S +S ++SVI+L N  F
Sbjct: 656 QCLSNISLSNSVISLSNPKF 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,983
Number of Sequences: 5004
Number of extensions: 24710
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)