Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31396
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    27   1.4  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    26   2.4  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   5.5  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    24   7.2  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    24   7.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   9.5  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    24   9.5  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    24   9.5  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 16  STTNVQTSHETKLMKRQRGESEAFSAEHISPITLPLGTPDWRSSAPRPPA 165
           +T +++  H  K  KR+   S      ++ P++ P  +PD   S+P PP+
Sbjct: 236 ATPDIKEQHAKK-PKRKHTRSTV-PTSNVEPVSQPQPSPDKIVSSPNPPS 283


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 192 PPRWRRLEWSILRNTPLGQNQRGLRI 269
           P    +L +SI RNT  G+N RGL +
Sbjct: 37  PEETEKLLYSIKRNTLGGKNNRGLAV 62


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 37  SHETKLMKRQRGESEAFSAEHISPITLPLGTPDW 138
           S +T +    RG++ AF   H+   + P+   DW
Sbjct: 407 SSDTTVKLWSRGDAGAFECLHVFSFSSPVNCIDW 440


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +1

Query: 28  VQTSHETKLMKRQRGESEAFSAEHISPITLPLGTPDWRSSAPRPPALSVGRLSEARL 198
           V+   + + +++QR E E  S+       +    P WR  +     LS G L  +++
Sbjct: 194 VEKQFQEETLQKQRFEREDESSRQKLSAAMNEDIPPWRQPSKNSQTLSNGDLQHSKV 250


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 158 HQPSR--SAGYPKPA*MAPVRMVYPTEYPAGSEPAWVEDSRPSIT 286
           + PSR  S+   KPA ++P    +  E P+GS P     SR + T
Sbjct: 112 NNPSRHVSSTSNKPAAVSPNPAAHHAELPSGSVPPSASVSRANST 156


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 217  GLSYGIPRWVRTSVG 261
            GL +G PRW++T  G
Sbjct: 2255 GLGFGAPRWLQTLWG 2269


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 387 GSPHMSAWGPAKGA*EDDVQAALHAFYA-RAMSIRVMEGRLSS 262
           GSP     GP  G    D+Q  L AF+A R+ S+  +  ++SS
Sbjct: 128 GSPPTPP-GPFPGGLSTDIQEKLKAFHASRSKSMPEVVNKISS 169


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 149 ADDRQSGVPRGRVMGEMCSALNASLSPLCLFMS 51
           AD+    VP   V+ ++CS L +   P  +F+S
Sbjct: 406 ADEELPDVPFYFVLSQICSVLRSQSPPQNIFVS 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,819
Number of Sequences: 5004
Number of extensions: 32074
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)