Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31396
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          24   0.71 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   2.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   2.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.6  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.8 bits (49), Expect = 0.71
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 10  CLSTTN-VQTSHETKLMKRQRGESEAFS--AEHISPITLPLGTPDWRSSAPRPP 162
           C  T N  Q   +   +KR   + +     AE + P  LP G  +  SS P+PP
Sbjct: 9   CKITANRQQVMRQNMKLKRHLAQDKVKVRVAEEVDP--LPFGVENTISSVPQPP 60


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 73  ESEAFSAEHISPITLPLGTPDWR 141
           +S  F  + I+   LPLG   WR
Sbjct: 174 DSAIFDGDFITENNLPLGLEVWR 196


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +1

Query: 274 AFHHPDAHCSCIKRVQSSLHVVFLXPLRRSPG 369
           ++H P+AH S  +++Q  +    +     +PG
Sbjct: 155 SWHSPEAHISVAQKLQKEIPNSIILDQYTNPG 186


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 307 IKRVQSSLHVVFLXPLRRSPGRHVRGPE 390
           ++  QS LH+    P  RSP    +  +
Sbjct: 664 VQHTQSQLHLHLTSPPARSPSSQAQASQ 691


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,599
Number of Sequences: 438
Number of extensions: 2907
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)