Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31392
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   173   1e-44
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   173   2e-44
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   6.6  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   8.7  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    25   8.7  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  173 bits (422), Expect = 1e-44
 Identities = 85/155 (54%), Positives = 100/155 (64%)
 Frame = +3

Query: 42  LSVARPLVSVYSEXXETVQGAAKPLPFVFXAPIRPDLVNDVHVSMSKNSRQPYCVSKXAG 221
           ++ ARP VS+YS+   +V      LPFVF APIRPDLV  VH +++KN RQPY VS+ AG
Sbjct: 1   MAAARPTVSIYSKDG-SVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 222 HQTSAESWGTGRAVARIPRVRXXXXXXXXXXXXXNMCRGGRMFAPTKPWRRWHXXXXXXX 401
           HQTSAESWGTGRA+ARIPRV              NMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 402 XXXXXXXXXXXTGVPXLVQARGHIIEKIPELPLVV 506
                      +GVP L+ ARGH IE+IPE+PLVV
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVV 154


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  173 bits (420), Expect = 2e-44
 Identities = 84/155 (54%), Positives = 100/155 (64%)
 Frame = +3

Query: 42  LSVARPLVSVYSEXXETVQGAAKPLPFVFXAPIRPDLVNDVHVSMSKNSRQPYCVSKXAG 221
           ++ ARP VS+Y++   +V      LPFVF APIRPDLV  VH +++KN RQPY VS+ AG
Sbjct: 1   MAAARPTVSIYNKDG-SVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 222 HQTSAESWGTGRAVARIPRVRXXXXXXXXXXXXXNMCRGGRMFAPTKPWRRWHXXXXXXX 401
           HQTSAESWGTGRA+ARIPRV              NMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 402 XXXXXXXXXXXTGVPXLVQARGHIIEKIPELPLVV 506
                      +GVP L+ ARGH IE+IPE+PLVV
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVV 154


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 103 APCTVSXFSEYTDTKGRATDRLISLL 26
           A C V  +SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 494 KLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEV 390
           KLG  FNN SS+++E +     N  CQ  S L+ +
Sbjct: 253 KLGYYFNNTSSTISEEF--KKRNKECQYDSVLNRL 285


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 324 YRRHXDRTYGYHH 286
           YRR   +TYGY+H
Sbjct: 411 YRREITQTYGYYH 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,303
Number of Sequences: 5004
Number of extensions: 29102
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)