Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31392
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   149   1e-36
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   6.0  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   6.0  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   7.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  149 bits (361), Expect = 1e-36
 Identities = 75/153 (49%), Positives = 93/153 (60%)
 Frame = +3

Query: 51  ARPLVSVYSEXXETVQGAAKPLPFVFXAPIRPDLVNDVHVSMSKNSRQPYCVSKXAGHQT 230
           ARPLV+VY E  E  Q   + LP VF  PIRPDLV+ +   + +N RQ + V+  AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 231 SAESWGTGRAVARIPRVRXXXXXXXXXXXXXNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 410
           SAESWGTGRAVARIPRVR             NMCRGG MFAP K +RRWH          
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121

Query: 411 XXXXXXXXTGVPXLVQARGHIIEKIPELPLVVA 509
                   +G+P L+QARGH+I+++ E+PLVV+
Sbjct: 122 AVSSAIAASGIPALLQARGHVIDQVAEVPLVVS 154


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 509 GYNQGKLGNL-FNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAP 369
           GY  G + N+  N VS+ + + ++AS+S G   G S  +E+D   P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 339 HHDTCYRRHXDRTYGYHHHGHAEFGQQH 256
           HHD  +++H  + +  HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +2

Query: 221 SPNQC--RIMGYRTCCCPNSAC 280
           S N+C  +  G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +2

Query: 221 SPNQC--RIMGYRTCCCPNSAC 280
           S N+C  +  G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +3

Query: 36  MSLSVARPLVSVYSEXXETVQGAAKPLPFVFXAPIRPDLVNDVHVSMSKNSRQPYCVS 209
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 142 RMGALNTNGRGLAAPCTVSXFSEYT-DTKGRATDRLISL 29
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 142 RMGALNTNGRGLAAPCTVSXFSEYT-DTKGRATDRLISL 29
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,946,806
Number of Sequences: 27780
Number of extensions: 182653
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)